Alignment of alleles: African clawed frog (Xenopus laevis) IGHV6S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   I   T   L   D   Q   P   G   S       T   L   V   K   P   S   D   T   L   K
  M24678  ,IGHV6S1*01           CAA ATA ACA CTT GAT CAG CCT GGA TCA ... ACT CTT GTG AAA CCG TCT GAT ACA CTA AAA

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   A   C   K   V   S   V   S   V   S   S   Y   Y                       W   T
  M24678  ,IGHV6S1*01           ATT GCC TGT AAA GTT TCT GTC TCT GTT AGC AGC TAT TAC ... ... ... ... ... TGG ACA

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   V   R   Q   T   P   G   K   G   L   E   Y   M   G   R   I   T   S   S   G
  M24678  ,IGHV6S1*01           TGG GTC AGG CAA ACT CCT GGG AAA GGA TTG GAA TAT ATG GGA AGA ATA ACT AGC AGT GGG

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 G   T               E   H   T   P   A   F   Q       N   R   V   T   L   T   R
  M24678  ,IGHV6S1*01           GGC ACA ... ... ... GAG CAT ACT CCT GCT TTT CAG ... AAT CGG GTG ACT TTA ACT AGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   A   A   K   N   E   I   Y   L   A   L   S   S   M   R   S   E   D   S   G
  M24678  ,IGHV6S1*01           GAC GCT GCA AAG AAT GAA ATA TAC CTG GCA CTG TCC AGT ATG AGA AGT GAA GAT TCT GGA

                                                CDR3-IMGT__
                                101 102 103 104 105 106
                                 T   Y   Y   C   A   S
  M24678  ,IGHV6S1*01           ACA TAT TAT TGT GCA AGT #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/08/2003
Author: Delphine Guiraudou