Alignment of alleles: African clawed frog (Xenopus laevis) TRBV1S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 N   V   V   I   T   Q   E   P   R   S   I   I   T   R   A   G   S   A   A   L
  U60425  ,TRBV1S1*01           AAT GTT GTG ATC ACC CAG GAG CCA AGA TCC ATT ATA ACC AGA GCT GGT TCT GCC GCC CTA

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 M   R   C   E   Q   K   T   S   D   Y   E   W                           M   F
  U60425  ,TRBV1S1*01           ATG AGA TGT GAG CAG AAG ACA AGT GAC TAT GAA TGG ... ... ... ... ... ... ATG TTC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   R   D   G   H   G   L   Q   L   I   S   T   Q   L   R   G   D
  U60425  ,TRBV1S1*01           TGG TAC CAA CAG AGA GAC GGG CAC GGC CTA CAG CTC ATC TCT ACT CAG CTC CGG GGC GAC

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 K                   P   T   Y   E   E   G   Y   K   D   G   F   Q   V   N   R
  U60425  ,TRBV1S1*01           AAA ... ... ... ... CCT ACA TAT GAA GAG GGC TAC AAA GAT GGC TTC CAG GTG AAC AGA

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 T   E   N   G   K   I   S   F   L   E   I   K   S   P   K   P   Q   D   Q   S
  U60425  ,TRBV1S1*01           ACT GAA AAT GGA AAG ATC AGT TTC CTG GAG ATC AAA TCC CCG AAG CCC CAA GAT CAG TCA

                                                ___CDR3-IMGT____
                                101 102 103 104 105 106 107
                                 L   Y   L   C   A   A   S
  U60425  ,TRBV1S1*01           CTT TAT CTG TGT GCG GCC AGT GA  #c

#c: rearranged cDNA.


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: Tuesday, 16-Jun-2020 15:26:45 CEST
Author: Delphine Guiraudou