Alignment of alleles: African clawed frog (Xenopus laevis) TRBV4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   V   T   V   T   Q   S   E   K   L   L   L   V   K   R   G   G   S   V   R
  U60428  ,TRBV4*01             CAA GTG ACG GTG ACA CAA AGC GAG AAA CTT CTA TTA GTG AAG AGA GGG GGG TCG GTG CGG

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   T   C   H   Q   S   A   A   D   Y   F   N                           M   F
  U60428  ,TRBV4*01             ATC ACT TGT CAC CAA TCT GCT GCT GAT TAT TTC AAC ... ... ... ... ... ... ATG TTC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   K   P   G   Q   G   L   K   L   M   V   W   S   T   G   A   N
  U60428  ,TRBV4*01             TGG TAC CAA CAG AAA CCG GGG CAG GGC CTG AAG CTC ATG GTC TGG TCA ACT GGT GCC AAT

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     D   G   K   M   E   G   E   Y   G   Q   R   W   Q   L   H
  U60428  ,TRBV4*01             ... ... ... ... ... GAT GGC AAA ATG GAG GGG GAA TAT GGG CAG AGG TGG CAG TTG CAC

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 R   S   D   T   H   N   C   V   L   N   V   T   G   A   E   A   E   D   D   A
  U60428  ,TRBV4*01             AGA AGT GAC ACC CAC AAT TGT GTT CTG AAT GTG ACC GGA GCA GAA GCA GAA GAT GAT GCC

                                                __CDR3-IMGT__
                                101 102 103 104 105 106
                                 Q   Y   F   C   A   A
  U60428  ,TRBV4*01             CAG TAT TTC TGT GCC GCC A  #c

#c: rearranged cDNA.


This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: Tuesday, 16-Jun-2020 15:26:45 CEST
Author: Delphine Guiraudou