Alignment of alleles: African clawed frog (Xenopus laevis) TRBV6

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                                                 R   L   V   L   V   P   L   G   Q   S   A   D
  U60434  ,TRBV6*01 (1)                                         AGG CTG GTG TTG GTT CCA CTT GGC CAG TCA GCT GAC

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   P   C   N   Q   D   Q   S   T   H   L   N                           M   Y
  U60434  ,TRBV6*01 (1)         ATT CCT TGT AAT CAG GAC CAG TCC ACT CAC CTC AAT ... ... ... ... ... ... ATG TAC

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   Y   Q   Q   N   P   G   E   G   L   K   L   M   I   Y   S   T   N   E   K
  U60434  ,TRBV6*01 (1)         TGG TAC CAA CAG AAC CCC GGG GAG GGC CTG AAG CTC ATG ATT TAC TCT ACT AAT GAG AAG

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                                     E   E   K   M   E   K   E   Y   E   E   R   W   S   L   N
  U60434  ,TRBV6*01 (1)         ... ... ... ... ... GAG GAG AAA ATG GAA AAA GAA TAC GAG GAG AGA TGG AGC CTG AAT

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 R   P   D   I   Y   N   S   V   L   R   L   K   E   A   K   M   E   D   A   A
  U60434  ,TRBV6*01 (1)         AGA CCT GAC ATA TAC AAT TCT GTT CTG AGG CTG AAG GAG GCA AAG ATG GAG GAC GCG GCG

                                                _CDR3-IMGT__
                                101 102 103 104 105 106 107
                                 Q   Y   F   C   A   S   Q
  U60434  ,TRBV6*01 (1)         CAG TAT TTT TGT GCA TCT CAG  #c
#c: rearranged cDNA.

IMGT note:
(1) Partial V-REGION: AA 1 to 8 are missing.

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: Friday, 22-Sep-2023 18:30:39 CEST
Author: Delphine Guiraudou