Motifs of the V-GENE PROMOTERs: Human IGKV

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IGKV
subgroup		 IGKV
gene name		 Fct IGKV
allele name		 Accession
number		 PENTADECAMER
(1) (2)		 Number of
nucleotides
between
PENTADECAMER
and DECAMER		 DECAMER/
OCTAMER (1) (3)		 Number of
nucleotides
between
DECAMER
and TATA_BOX		 TATA_BOX Number of
nucleotides
between
TATA_BOX
and ATG
1 IGKV1-5 F IGKV1-5*01 Z00001 tgcagctgtgcccag 17 tcatttgcat 32 ttattaata 46
F IGKV1-5*01 J00245 tgcccag. . . . . . . . 17 tcatttgcat 32 ttattaata 46
F IGKV1-5*02 M23851 tgcagctgtgcccag 17 tcatttgcat 31 ttattaata 46
IGKV1-6 F IGKV1-6*01 M64858 tgcagctgtgcccag 17 tcatttgcat 32 ttattaaca 46
IGKV1-8 F IGKV1-8*01 Z00014 tgcagctgtgcccag 17 tca. . . . . . . 18 ttattaata 52
IGKV1-9 F IGKV1-9*01 Z00013 cgcagctgtatccag 17 cgatttgctt 32 ttcttaata 45
IGKV1-12 F IGKV1-12*01 V01577 tgcagctgcgcccag 17 tcatttgcat 32 ttattaaca 46
F IGKV1-12*01 K02094 tgcagctgcgcccag 17 tcatttgcat 32 ttattaaca 48
IGKV1-12/IGKV1D-12 F IGKV1-12*02/IGKV1D-12*02 V01576 tgcagctgtgcccag 17 tcatttgcat 31 ttcttaata 46
IGKV1-13 P IGKV1-13*01 Z00010 tgcagctgtgcccag 16 tcatttgcat 32 ttcttaata 46
IGKV1-13/1D-13 F IGKV1-13*02/IGKV1D-13*02 Z00006 tgcagctgtgcccag 17 tcatttgcat 32 ttcttaata 46
IGKV1-16 F IGKV1-16*01 J00248 tgcagctgtgcccag 17 tcatttgcat 32 ttattaata 46
IGKV1-17 F IGKV1-17*01 X72808 tgcagctgcgcccag 17 tcatttgcat 32 ttattaata 46
IGKV1-22 P   X71885 tgcagctgtgcccag 17 tgatttgcat 32 ttcttaata 46
IGKV1-27 F IGKV1-27*01 X63398 tgcagtgttattgag 23 agatttgcat 33 ttatcaata 46
IGKV1-32 P   J00250 tgcaggtaaagtcat 14 aaattttcat 32 ttgtacaca 46
P   X71883 tgcaggtaaagtcat 14 aaattttcat 32 ttgtacaca 46
IGKV1-33 F IGKV1-33*01 M64856 tgcagctgtgcccag 17 tgatttgcat 32 ttattaata 46
F IGKV1-33*01 M64857 tgcagctgtgcccag 17 tgatttgcat 32 ttattaata 48
IGKV1-35 P   X71890 tgcagctgtgcccag 17 tgatttgcat 30 ttattaatt 46
IGKV1-37 F IGKV1-37*01 X59316 cgcagctgtgcccag 17 tgatttgcat 32 ttcttaaca 46
IGKV1-39 F IGKV1-39*01 X59315 tgcagctgtgctcag 21 tgatttgcat 31 ttttttatg 46
P IGKV1-39*02 X59318 tgcagctgtgctcag 17 tgatttgcat 31 ttttttata 46
IGKV1D-8 F IGKV1D-8*01 Z00008 tgcagctgtgcccag 17 tcatttgcat 32 ttattaata 46
F IGKV1D-8*01 X72819     tcatttgcat 33 ttattaata 46
IGKV1D-12 F IGKV1D-12*01 X17263 tgcagctgcgcccag 17 tcatttgcat 32 ttattaaca 46
IGKV1D-13 ORF IGKV1D-13*01 X17262 tgcagctgtgtccag 16 tcatttgcat 32 ttcttaata 46
IGKV1D-16 F IGKV1D-16*01 X92329 tgcagctgtgcccag 17 tcatttgcat 32 ttattaata 46
F IGKV1D-16*01 K01323 tgcagctgtgcccag 17 tcatttgcat 32 ttattaata 46
F IGKV1D-16*02 V00558 tgcagctgtgcccag 17 tcatttgcat 32 ttattaata 46
(V00558/J00246)
F IGKV1D-16*02 K01322 tgcagctgtgcccag 17 tcatttgcat 32 ttattaata 46
F IGKV1D-16*02 K01324 tgcagctgtgcccag 17 tcatttgcat 32 ttattaata 46
IGKV1D-17 F IGKV1D-17*01 X63392 tgcagctgcgcccag 17 tcatttgcat 32 ttattaata 46
IGKV1D-22 P   X71887 tgcagctgtgcccag 17 tgatttgcat 32 ttcttaata 46
IGKV1D-27 P   Z00004 tgcagctgtg. . . . . 1 agatttgcat 33 ttatcaata 46
IGKV1D-32 P   X71896 tgcagataaagtcat 14 aaattttcat 32 ttgtacaca 46
IGKV1D-33 F IGKV1D-33*01 M64855 tgcagctgtgcccag 17 tgatttgcat 32 ttattaata 46
IGKV1D-35 P   X71894 . . . . . . .gtgcccag 17 tgatttgcat 30 ttattaatt 46
IGKV1D-37 F IGKV1D-37*01 X71893 cgcagctgtgcccag 17 tgatttgcat 32 ttcttaaca 46
IGKV1D-42 ORF IGKV1D-42*01 X72816 cgcagctgtatccag 17 cgttttgctt 32 ttcttaata 45
IGKV1D-43 F IGKV1D-43*01 X72817 atcccctgtgcccag 17 taatttgcat 32 ttattaatg 46
F IGKV1D-43*01 X72818     taatttgcat 32 ttattaatg 47
2 IGKV2-4 P   X72814 tggatatttcttcac 16 ggatttgcat 38 ataaaa 55
IGKV2-10 P   Z00012     ggatttgcat 37 acgaaa 54
IGKV2-14 P   X72810 tggctctttccaccc 16 ggatttgcat 38 ataaaa 55
IGKV2-18 P   X63400 tggctctttccaccc 16 ggatttgcat 38 ataaaa 55
IGKV2-23 P   X71885 tggctctttccacac 16 ggatgtgcat 38 agtaaa 55
IGKV2-24 F IGKV2-24*01 X12684 atgttatttctacac 16 ggatttgcat 38 ataaaa 55
IGKV2-26 P   X71884 tgttgcgcttagcat 15 ggatttgcat 38 ataaaa 56
IGKV2-28 F IGKV2-28*01 X63397 tgactctttccacac 16 ggatttgcat 38 ataaaa 55
IGKV2-29 P IGKV2-29*01 X63396 tggctctttccacac 16 tgatttgcat 38 ataaaa 55
F IGKV2-29*02 U41645 tggctctttccacac 16 tgatttgcat 38 ataaaa 55
IGKV2-30 F IGKV2-30*01 X63403 tggctctttccaccc 16 tgatttgcat 37 ataaaa 55
IGKV2-40 F IGKV2-40*01 X59314 caaccttttccacac 16 tgatttgcat 40 ataaaa 56
IGKV2D-10 P   X17265     ggatttgcat 37 ataaaa 55
IGKV2D-14 P   X72811 tggctctttccaccc 16 ggatttgcat 38 ataaaa 55
IGKV2D-18 P   X63395 tggctctttccaccc 16 ggatttgcat 38 ataaaa 55
IGKV2D-23 P   X71887 tggctctttccacac 16 ggatgtgcat 38 agaaaa 55
IGKV2D-24 ORF IGKV2D-24*01 X63401 atgttatttctacac 16 ggatttgcat 38 ataaaa 55
IGKV2D-26 P   X12689     ggatttgcat 37 ataaaa 56
IGKV2D-28 F IGKV2D-28*01 X12691 tgactctttccacac 16 ggatttgcat 37 ataaaa 55
IGKV2D-29 F IGKV2D-29*01 M31952 tggctctttccacac 16 tgatttgcat 38 ataaaa 55
F IGKV2D-29*02 U41643 tggctctttccacac 16 tgatttgcat 38 ataaaa 55
F IGKV2D-29*02 U41644 tggctctttccacac 16 tgatttgcat 38 ataaaa 55
IGKV2D-30 F IGKV2D-30*01 X63402 tggctctttccaccc 16 tgatttgcat 37 ataaaa 55
IGKV2D-40 F IGKV2D-40*01 X59311 caaccttttccacac 16 tgatttgcat 40 ataaaa 56
3 IGKV3-7 ORF IGKV3-7*01 X02725 tgcagctggaagctc 14 tgctttgcat 32 atatcaat 53
ORF IGKV3-7*02 X72812 tgcagctggaagctc 14 tgctttgcat 32 atatcaat 53
ORF IGKV3-7*03 K02769 tgcagctggaagctc 14 tgctttgcat 32 atatcaat 53
IGKV3-11 F IGKV3-11*01 X01668 tgcagctggaagctc 14 tgctttgcat 32 atatcaat 53
F IGKV3-11*02 K02768 tgcagctggaagctc 14 tgctttgcat 32 atatcaat 53
IGKV3-15 F IGKV3-15*01 M23090 tgcagctgaaagctc 15 tgctttgcat 32 atatcaat 53
IGKV3-20 F IGKV3-20*01 M15038 tgcagctgcaagccc 15 tgctttgcat 32 atatcaat 53
F IGKV3-20*01 X12686     tgctttgcat 32 atatcaat 53
IGKV3-25 P   X06583 ttctaatgtcactaa 5 aactttgcat 34 atatttat 64
IGKV3-31 P   X71883 tgcagtttcgaagcc 15 tgttatgcat 32 atatcaat 51
IGKV3-34 P   X71891 tgcagctggaagccc 15 tactttgcat 31 atatcaat 53
IGKV3D-7 F IGKV3D-7*01 X72820 tgcagctggaagccc 15 tgctttgcat 32 atatcaat 45
IGKV3D-11 F IGKV3D-11*01 X17264         atatcaat 53
IGKV3D-15 F IGKV3D-15*01 M23089 tgcagctggaagctc 15 tgctttgcat 32 atatcaat 53
F IGKV3D-15*01 X72815         atatcaat 53
F IGKV3D-15*01 M23088 tgcagctggaagctc 15 tgctttgcat 32 atatcaat 53
P IGKV3D-15*02 M23091 tgcagctggaagctc 15 tgctttgcat 32 atatcaat 53
IGKV3D-20 F IGKV3D-20*01 M14507 tgaagctggaagccc 18 tgctttgcat 32 atatcaat 53
F IGKV3D-20*01 X12687     tgctttgcat 32 atatcaat 53
IGKV3D-25 P   X71886 ttctaatgtcactaa 5 aactttgcat 34 atatttat 64
IGKV3D-31 P   X71896 tgcagtttcgaagcc 15 tgttatgcat 32 atatcaat 51
IGKV3D-34 P   X71895 tgcagctggaagccc 15 tactttgcat 31 atatcaat 53
4 IGKV4-1 F IGKV4-1*01 AF017732 tggctcttgatttac 55 gtttttgcat 32 ttttataaa 52
F IGKV4-1*01 Z00023     . . . . . .gcat 33 ttttataaa 52
5 IGKV5-2 F IGKV5-2*01 X02485 tgcacagctgtgaag 81 taatttgcat 38 ataaaat 57
6 IGKV6-21 ORF IGKV6-21*01 X63399 tgcaggtgccagcag 91 taatttgcat 44 ttaaaa 55
IGKV6D-21 ORF IGKV6D-21*01 X12683 tgcaggtgccagcag 91 taatttgcat 44 ttaaaa 55
ORF IGKV6D-21*01 M27750     taatttgcat 44 ttaaaa 55
IGKV6D-41 ORF IGKV6D-41*01 M27751 tgcaggtgccagcag 90 taatttgcat 44 ttataa 53
ORF IGKV6D-41*01 M27751     taatttgcat 44 ttataa 53
7 IGKV7-3 P   X12682 agcaggtgtcccctt 27 tgatttgcat 41 ttaaa 51
n.d.(4) n.d.(4)     J00247 tgcagctgtgctcag 17 tgatttgcct 32 tttttata 52

IMGT notes:
(1) Dots or empty cells indicate partial or absent motifs respectively, due to partial sequences.
(2) The E-Box, if present, is shown in bold.
(3) The OCTAMER is shown in bold.
(4) n.d. not defined. Partial V-GENE sequence: only the promoter sequence is known, the three last nucleotides in 3' being the INIT-CODON ATG.

Created: 26/10/1999
Last updated: Friday, 22-Sep-2023 18:31:11 CEST
Author: Loubna Tazi