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**Mouse (Mus musculus ) TRA/TRD locus at 14 D1-D2**

Information from		Clone accession number AF259072
IMGT/LIGM-DB flat file	ID	length clone	170356 bp
	AC	accession numbers	AF259072;
	FT
		clone	MBAC1058; RG:331N4
		clone_lib	Research Genetics Mouse Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV1
IMGT/LocusView locus information		Positions on the locus	1 to 170356
		Clone orientation	direct orientation on the locus
		3' overlapping clone	AF259074 overlapping from 164682 to 170356 of AF259072.

Information from		Clone accession number AF259074
IMGT/LIGM-DB flat file	ID	length clone	72831 bp
	AC	accession numbers	AF259074;
	CC	overlapping sequences	(GenBank AF259071)
	FT
		clone	MBAC519; RG:298L19
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain	129/SvJ
Gene names according to IMGT/GENE-DB		TRAV2
IMGT/LocusView locus information		Positions on the locus	164682 to 237512
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AF259072 overlapping from 1 to 5675 of AF259074.
		3' overlapping clone	AF259071 overlapping from 67577 to 72830 of AF259074.

Information from		Clone accession number AF259071
IMGT/LIGM-DB flat file	ID	length clone	131732 bp
	AC	accession numbers	AF259071;
	FT
		clone	MBAC01; RG:24H10
		clone_lib	Research Genetics Mouse BAC library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV3-1, TRAV4-1, TRAV5-1, TRAV6-1, TRAV7-1, TRAV6-2, TRAV7D-2
IMGT/LocusView locus information		Positions on the locus	232259 to 363990
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AF259074 overlapping from 1 to 5254 of AF259071.
		3' overlapping clone	AF259073 overlapping from 124517 to 131731 of AF259071.

Information from		Clone accession number AF259073
IMGT/LIGM-DB flat file	ID	length clone	31638 bp
	AC	accession numbers	AF259073;
	CC	overlapping sequences	UWGC:ma53a068 (GenBank
	FT
		clone	MBAC15; RG:98G23
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain	129/SvJ
Gene names according to IMGT/GENE-DB		TRAV4D-2, TRAV6D-3
IMGT/LocusView locus information		Positions on the locus	356776 to 388413
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AF259071 overlapping from 1 to 7215 of AF259073.
		3' overlapping clone	AC005403 overlapping from 19807 to 31637 of AF259073.

Information from		Clone accession number AC005403
IMGT/LIGM-DB flat file	ID	length clone	40638 bp
	AC	accession numbers	AC005403;
	CC	overlapping sequences
	FT
		clone	UWGC:mbac53 or RG:473N1
		clone_lib	Research Genetics Mouse BAC library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV7D-3, TRAV6D-4
IMGT/LocusView locus information		Positions on the locus	376583 to 417220
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AF259073 overlapping from 1 to 11831 of AC005403.

Information from		Clone accession number AC003994
IMGT/LIGM-DB flat file	ID	length clone	43576 bp
	AC	accession numbers	AC003994;
	CC	overlapping sequences	Quality Assessment: This entry has been annotated with sequence quality
	FT
		clone	UWGC:mbac53 or RG:473N1
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV7D-4, TRAV8D-1, TRAV9D-1, TRAV6D-5, TRAV10D
IMGT/LocusView locus information		Positions on the locus	418568 to 462143
		Clone orientation	direct orientation on the locus
		3' overlapping clone	AC004101 overlapping from 40072 to 43575 of AC003994.

Information from		Clone accession number AC004101
IMGT/LIGM-DB flat file	ID	length clone	39491 bp
	AC	accession numbers	AC004101;
	CC	overlapping sequences	UWGC:ma37
	FT
		clone	UWGC:ma53 or RG:473N1
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV6D-6, TRAV11D, TRAV7D-5, TRAV12D-1
IMGT/LocusView locus information		Positions on the locus	458630 to 498120
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC003994 overlapping from 1 to 3514 of AC004101.
		3' overlapping clone	AC005402 overlapping from 38946 to 39490 of AC004101.

Information from		Clone accession number AC005402
IMGT/LIGM-DB flat file	ID	length clone	132090 bp
	AC	accession numbers	AC005402;
	CC	overlapping sequences	UWGC:ma10glue1
	FT	V-CLUSTER	1..132090
		clone	UWGC:mbac37 or RG:350G16
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV13D-1, TRAV14D-1, TRAV15D-1/DV6D-1, TRAV3D-2, TRAV9D-2, TRAV4D-3, TRAV5D-2, TRAV12D-2, TRAV9D-3, TRAV5D-3, TRAV12D-3, TRAV13D-2, TRAV14D-2, TRAV15D-2/DV6D-2, TRAV3D-3
IMGT/LocusView locus information		Positions on the locus	497576 to 629665
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC004101 overlapping from 1 to 545 of AC005402.

Information from		Clone accession number AC005855
IMGT/LIGM-DB flat file	ID	length clone	87398 bp
	AC	accession numbers	AC005855;
	CC	overlapping sequences	Accession: AC004407)
	FT
		clone	UWGC:mbac92 or RG:113D16
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV9D-4, TRAV4D-4, TRAV5D-4, TRAV6D-7, TRAV7D-6, TRAV13D-3, TRAV8D-2, TRAV16D/DV11, TRAV13D-4
IMGT/LocusView locus information		Positions on the locus	633528 to 720925
		Clone orientation	direct orientation on the locus
		3' overlapping clone	AC004407 overlapping from 75834 to 87397 of AC005855.

TRAV7-2

Information from		Clone accession number AC004407
IMGT/LIGM-DB flat file	ID	length clone	119865 bp
	AC	accession numbers	AC004407;
	CC	overlapping sequences
	FT
		clone	UWGC:mbac6 or RG:44C9
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV14D-3/DV8, TRAV15D-3, TRAV7-2, TRAV4-2, TRAV6-3, TRAV7-3, TRAV6-4, TRAV7-4, TRAV8-1
IMGT/LocusView locus information		Positions on the locus	709262 to 829126
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC005855 overlapping from 1 to 11664 of AC004407.
		3' overlapping clone	AC004405 overlapping from 117295 to 119864 of AC004407.

Information from		Clone accession number AC004405
IMGT/LIGM-DB flat file	ID	length clone	43178 bp
	AC	accession numbers	AC004405;
	CC	overlapping sequences
	FT
		clone	UWGC:mbac36 or RG:342D22
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV9-1, TRAV6-5
IMGT/LocusView locus information		Positions on the locus	826557 to 869734
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC004407 overlapping from 1 to 2570 of AC004405.
		3' overlapping clone	AC005240 overlapping from 41715 to 43177 of AC004405.

Information from		Clone accession number AC005240
IMGT/LIGM-DB flat file	ID	length clone	41830 bp
	AC	accession numbers	AC005240;
	CC	overlapping sequences	UWGC:ma40a113 (Genbank Accession: AC004406)
	FT
		clone	UWGC:mbac36 or RG:342D22
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV10, TRAV6-6, TRAV11
IMGT/LocusView locus information		Positions on the locus	868272 to 910101
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC004405 overlapping from 1 to 1463 of AC005240.
		3' overlapping clone	AC004406 overlapping from 39954 to 41829 of AC005240.

Information from		Clone accession number AC004406
IMGT/LIGM-DB flat file	ID	length clone	47536 bp
	AC	accession numbers	AC004406;
	CC	overlapping sequences
	FT
		clone	UWGC:mbac40 or RG:407F8
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV12-1, TRAV13-1, TRAV14-1, TRAV15-1/DV6-1, TRAV7-5
IMGT/LocusView locus information		Positions on the locus	908226 to 955761
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC005240 overlapping from 1 to 1876 of AC004406.

Information from		Clone accession number AC003997
IMGT/LIGM-DB flat file	ID	length clone	122176 bp
	AC	accession numbers	AC003997;
	CC	overlapping sequences
	FT
		clone	UWGC:mbac20 or RG:170C12
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV3-2, TRAV9-2, TRAV12-2, TRAV9-3, TRAV5-3, TRAV12-3, TRAV5-2, TRAV13-2, TRAV14-2, TRAV15-2/DV6-2, TRAV3-3, TRAV9-4
IMGT/LocusView locus information		Positions on the locus	959179 to 1081354
		Clone orientation	direct orientation on the locus
		3' overlapping clone	AC004102 overlapping from 121437 to 122175 of AC003997.

Information from		Clone accession number AC004102
IMGT/LIGM-DB flat file	ID	length clone	5600 bp
	AC	accession numbers	AC004102;
	CC	overlapping sequences	UWGC:ma66a094 (Genbank Accession: AC003995)
	FT
		clone	UWGC:ma66 or RG:553K23
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV4-4/DV10
IMGT/LocusView locus information		Positions on the locus	1080616 to 1086215
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC003997 overlapping from 1 to 739 of AC004102.
		3' overlapping clone	AC003995 overlapping from 5360 to 5599 of AC004102.

Information from		Clone accession number AC003995
IMGT/LIGM-DB flat file	ID	length clone	36254 bp
	AC	accession numbers	AC003995;
	CC	overlapping sequences
	FT
		clone	UWGC:mbac66 or RG:553K23
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV5-4, TRAV6-7-DV9, TRAV7-6, TRAV13-3
IMGT/LocusView locus information		Positions on the locus	1085976 to 1122229
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC004102 overlapping from 1 to 240 of AC003995.
		3' overlapping clone	AC004096 overlapping from 32625 to 36253 of AC003995.

Information from		Clone accession number AC004096
IMGT/LIGM-DB flat file	ID	length clone	40144 bp
	AC	accession numbers	AC004096;
	CC	overlapping sequences	UWGC:ma66a097 (Genbank Accession: AC003996)
	FT
		clone	UWGC:mbac66 or RG:553K23
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV8-2, TRAV16, TRAV13-4/DV7, TRAV14-3, TRAV15-3, TRAV3-4
IMGT/LocusView locus information		Positions on the locus	1118601 to 1158744
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC003995 overlapping from 1 to 3629 of AC004096.
		3' overlapping clone	AC003996 overlapping from 36251 to 40143 of AC004096.

Information from		Clone accession number AC003996
IMGT/LIGM-DB flat file	ID	length clone	43808 bp
	AC	accession numbers	AC003996;
	CC	overlapping sequences
	FT
		clone	UWGC:mbac66 or RG:553K23
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV13-4/DV7, TRAV14-3, TRAV15-3, TRAV3-4
IMGT/LocusView locus information		Positions on the locus	1154852 to 1198659
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC004096 overlapping from 1 to 3893 of AC003996.
		3' overlapping clone	AC005938 overlapping from 25961 to 43807 of AC003996.

Information from		Clone accession number AC005938
IMGT/LIGM-DB flat file	ID	length clone	161871 bp
	AC	accession numbers	AC005938;
	CC	overlapping sequences	UWGC:ma03m061(Genbank Accession:AC004399)
	FT
		clone	UWGC:mbac24 or RG:200P8
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV12-4, TRAV13-5, TRAV17, TRAV18, TRAV19, TRAV20, TRAV21/DV12, TRDV1
IMGT/LocusView locus information		Positions on the locus	1180813 to 1342683
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC003996 overlapping from 1 to 17847 of AC005938.
		3' overlapping clone	AC004399 overlapping from 153690 to 161870 of AC005938.

Information from		Clone accession number AC004399
IMGT/LIGM-DB flat file	ID	length clone	38588 bp
	AC	accession numbers	AC004399;
	CC	overlapping sequences	AC003993
	FT
		clone	UWGC:mbac03 or RG:29L11
		clone_lib	Research Genetics BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRAV22
IMGT/LocusView locus information		Positions on the locus	1334503 to 1373090
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC005938 overlapping from 1 to 8181 of AC004399.
		3' overlapping clone	AC003993 overlapping from 36671 to 38587 of AC004399.

Information from		Clone accession number AC003993
IMGT/LIGM-DB flat file	ID	length clone	38277 bp
	AC	accession numbers	AC003993;
	CC	overlapping sequences
	FT
		clone	UWGC:mbac3 or RG:29L11
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRDV2-1, TRDV2-2, TRAV23
IMGT/LocusView locus information		Positions on the locus	1371174 to 1409450
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC004399 overlapping from 1 to 1917 of AC003993.
		3' overlapping clone	AC005835 overlapping from 1917 to 38276 of AC003993.

Information from		Clone accession number AC005835
IMGT/LIGM-DB flat file	ID	length clone	132297 bp
	AC	accession numbers	AC005835;
	CC	overlapping sequences	UWGC:ma08m030 (Genbank Accession: AC003057)
	FT
		clone	UWGC:mbac82 or RG:516L4
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRDV3
IMGT/LocusView locus information		Positions on the locus	1373091 to 1499812
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC003993 overlapping from 1 to 36360 of AC005835.
		3' overlapping clone	AC003057 overlapping from 120256 to 126721 of AC005835.

Information from		Clone accession number AC003057
IMGT/LIGM-DB flat file	ID	length clone	33608 bp
	AC	accession numbers	AC003057;
	CC	overlapping sequences	UWGC:ma08m078
	FT
		clone	UWGC:mbac08 or RG:48G17
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRDV4
IMGT/LocusView locus information		Positions on the locus	1493347 to 1526954
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC005835 overlapping from 1 to 6466 of AC003057.
		3' overlapping clone	AC004404 overlapping from 33526 to 33607 of AC003057.

Information from		Clone accession number AC004404
IMGT/LIGM-DB flat file	ID	length clone	44851 bp
	AC	accession numbers	AC004404;
	CC	overlapping sequences
	FT
		clone	UWGC:mbac08 or RG:48G17
		clone_lib	Research Genetics Mouse BAC Library
		cell_line	CJ7
		strain
Gene names according to IMGT/GENE-DB		TRDD1, TRDD2, TRDJ1
IMGT/LocusView locus information		Positions on the locus	1526873 to 1571723
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC003057 overlapping from 1 to 82 of AC004404.
		3' overlapping clone	M64239 overlapping from 44847 to 44850 of AC004404.

Information from		Clone accession number M64239
IMGT/LIGM-DB flat file	ID	length clone	94647 bp
	AC	accession numbers	M64239;
	FT	clone
		clone_lib
		cell_line
		strain
Gene names according to IMGT/GENE-DB		TRDJ2, TRDC, TRDV5, TRAJ1 to TRAJ61, TRAC
IMGT/LocusView locus information		Positions on the locus	1571720 to 1666366
		Clone orientation	direct orientation on the locus
		5' overlapping clone	AC004404 overlapping from 1 to 4 of M64239.

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Contact IMGT/CloneSearch , France :
Stéphanie Jeanjean and Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr

Created: 15/11/2003

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Université de Montpellier

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