Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of American mink (Neogale vison) IGHC IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers		Positions
in the sequence		Secondary
accession
numbers		Clone namesIsolateAccession
numbers		Positions
in the sequence
IGHA IGHA*01 F 13 CH1 M4711 IMGT000109 [1] MAP 884437-884742
IGHA IGHA*01 F 13 H-CH2 M4711 IMGT000109 [1] MAP 884916-885260
IGHA IGHA*01 F 13 CH3-CHS M4711 IMGT000109 [1] MAP 885442-885836
IGHA IGHA*01 F 13 M M4711 IMGT000109 [1] MAP 887732-887943
IGHD IGHD*01 F (1) 13 CH1 M4711 IMGT000109 [1] MAP 766330-766596
IGHD IGHD*01 F (1) 13 H1 M4711 IMGT000109 [1] MAP 766799-766873
IGHD IGHD*01 F (1) 13 H2 M4711 IMGT000109 [1] MAP 768090-768158
IGHD IGHD*01 F (1) 13 CH2 M4711 IMGT000109 [1] MAP 769155-769481
IGHD IGHD*01 F (1) 13 CH3 M4711 IMGT000109 [1] MAP 769670-769981
IGHD IGHD*01 F (1) 13 M1 M4711 IMGT000109 [1] MAP 773769-773917
IGHD IGHD*01 F (1) 13 M2 M4711 IMGT000109 [1] MAP 774212-774217
IGHE IGHE*01 F 13 CH1 M4711 IMGT000109 [1] MAP 872525-872821
IGHE IGHE*01 F 13 CH2 M4711 IMGT000109 [1] MAP 872937-873260
IGHE IGHE*01 F 13 CH3 M4711 IMGT000109 [1] MAP 873350-873670
IGHE IGHE*01 F 13 CH4-CHS M4711 IMGT000109 [1] MAP 873743-874080
IGHE IGHE*01 F 13 M1 M4711 IMGT000109 [1] MAP 875913-876046
IGHE IGHE*01 F 13 M2 M4711 IMGT000109 [1] MAP 876136-876216
IGHG2 IGHG2*01 F 13 CH1 M4711 IMGT000109 [1] MAP 817446-817736
IGHG2 IGHG2*01 F 13 H M4711 IMGT000109 [1] MAP 818012-818053
IGHG2 IGHG2*01 F 13 CH2 M4711 IMGT000109 [1] MAP 818173-818496
IGHG2 IGHG2*01 F 13 CH3-CHS M4711 IMGT000109 [1] MAP 818608-818933
IGHG2 IGHG2*01 F 13 M1 M4711 IMGT000109 [1] MAP 820779-820909
IGHG2 IGHG2*01 F 13 M2 M4711 IMGT000109 [1] MAP 822334-822414
IGHG4 IGHG4*01 F 13 CH1 M4711 IMGT000109 [1] MAP 855722-856012
IGHG4 IGHG4*01 F 13 H M4711 IMGT000109 [1] MAP 856288-856335
IGHG4 IGHG4*01 F 13 CH2 M4711 IMGT000109 [1] MAP 856449-856778
IGHG4 IGHG4*01 F 13 CH3-CHS M4711 IMGT000109 [1] MAP 856890-857215
IGHG4 IGHG4*01 F 13 M1 M4711 IMGT000109 [1] MAP 858969-859099
IGHG4 IGHG4*01 F 13 M2 M4711 IMGT000109 [1] MAP 860615-860695
IGHM IGHM*01 F 13 CH1 M4711 IMGT000109 [1] MAP 758880-759197
IGHM IGHM*01 F 13 CH2 M4711 IMGT000109 [1] MAP 759275-759613
IGHM IGHM*01 F 13 CH3 M4711 IMGT000109 [1] MAP 759857-760174
IGHM IGHM*01 F 13 CH4-CHS M4711 IMGT000109 [1] MAP 760275-760666
IGHM IGHM*01 F 13 M1 M4711 IMGT000109 [1] MAP 762600-762715
IGHM IGHM*01 F 13 M2 M4711 IMGT000109 [1] MAP 762801-762806
IMGT notes: ↑
  1. no CHS found, but declared as functional due to gene homology with IGHD of Mustela putorius furo
IMGT references: ↑
  1. Karimi,K. et al., The first chromosome-level genome assembly for American mink, Unpublished.