Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Atlantic salmon (Salmo salar) IGHD IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesStrainAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)		Secondary
accession
numbers		Clone namesStrainAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)
IGHDIGHD1 IGHD1*01 F ssa06
RTPr
++
 GU129139 [1] 757536-757604
IGHDIGHD1D IGHD1D*01 F ssa03
RTPr
++
 GU129140 [1] 956096-956164
IGHDIGHD1T2 IGHD1T2*01 F ssa06
RTPr
++
 GU129139 [1] 333099-333187
IGHDIGHD1T2D IGHD1T2D*01 F ssa03
RTPr
++
 GU129140 [1] 528703-528771
IGHDIGHD1T3D IGHD1T3D*01 F ssa03
RTPr
++
 GU129140 [1] 833042-833109
IGHDIGHD1T4 IGHD1T4*01 F ssa06 GU129139 [1] complement(661333-661421)
IGHDIGHD1T5 IGHD1T5*01 F ssa06
RTPr
++
 GU129139 [1] 710801-710869
IGHDIGHD2 IGHD2*01 F ssa06
RTPr
++
 GU129139 [1] 758408-758476
IGHDIGHD2D IGHD2D*01 F ssa03 GU129140 [1] 956554-956622
IGHDIGHD2T2 IGHD2T2*01 F ssa06
RTPr
++
 GU129139 [1] 333562-333633
IGHDIGHD2T2D IGHD2T2D*01 F ssa03
RTPr
++
 GU129140 [1] 529104-529174
IGHDIGHD2T3D IGHD2T3D*01 F ssa03 GU129140 [1] 832409-832477
IGHDIGHD2T4 IGHD2T4*01 F ssa06 GU129139 [1] complement(660887-660958)
IGHDIGHD3 IGHD3*01 F ssa06 GU129139 [1] 758849-758916
IGHDIGHD3D IGHD3D*01 F ssa03 GU129140 [1] 956997-957064
IGHDIGHD3T3D IGHD3T3D*01 F ssa03 GU129140 [1] 831958-832023
IGHDIGHD3T4 IGHD3T4*01 F ssa06
RTPr
++
 GU129139 [1] complement(647978-648046)
IGHDIGHD4 IGHD4*01 F ssa06
RTPr
++
 GU129139 [1] 759635-759702
IGHDIGHD4D IGHD4D*01 F ssa03 GU129140 [1] 957786-957853
IGHDIGHD4T4 IGHD4T4*01 F ssa06
RTPr
++
 GU129139 [1] complement(647571-647639)
IGHDIGHD5 IGHD5*01 F ssa06
RTPr
++
 GU129139 [1] 760074-760142
IGHDIGHD5D IGHD5D*01 F ssa03
RTPr
++
 GU129140 [1] 958189-958256
IGHDIGHD5T4 IGHD5T4*01 F ssa06
RTPr
++
 GU129139 [1] complement(645722-645789)
IGHDIGHD6 IGHD6*01 F ssa06
RTPr
++
 GU129139 [1] 760688-760755
IGHDIGHD6D IGHD6D*01 F ssa03 GU129140 [1] 958724-958791
IGHDIGHD7 IGHD7*01 F ssa06 GU129139 [1] 779189-779256
IGHDIGHD8 IGHD8*01 F ssa06
RTPr
++
 GU129139 [1] 779950-780017
IGHDIGHD9 IGHD9*01 F ssa06 GU129139 [1] 780469-780536
IMGT references: ↑
  1. Yasuike M. et al., Evolution of duplicated IgH loci in Atlantic salmon, Salmo salar, BMC Genomics, vol. 11, 2010, pp. 486-486. DOI: 10.1186/1471-2164-11-486