Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of American mink (Neogale vison) IGHD IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)		Secondary
accession
numbers		Clone namesIsolateAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)
IGHDIGHD1 IGHD1*01 ORF (1) 13 M4711 IMGT000109 [1] MAP 714768-714851
IGHDIGHD2 IGHD2*01 F 13 M4711 IMGT000109 [1] MAP 715407-715482
IGHDIGHD3 IGHD3*01 ORF (2) 13 M4711 IMGT000109 [1] MAP 717486-717571
IGHDIGHD4 IGHD4*01 ORF (3) 13 M4711 IMGT000109 [1] MAP 720196-720280
IGHDIGHD5 IGHD5*01 F 13 M4711 IMGT000109 [1] MAP 720826-720898
IGHDIGHD6 IGHD6*01 ORF (4) 13 M4711 IMGT000109 [1] MAP 722345-722424
IGHDIGHD7 IGHD7*01 ORF (5) 13 M4711 IMGT000109 [1] MAP 723049-723124
IGHDIGHD8 IGHD8*01 F 13 M4711 IMGT000109 [1] MAP 724208-724284
IGHDIGHD9 IGHD9*01 ORF (6) 13 M4711 IMGT000109 [1] MAP 724463-724537
IGHDIGHD10 IGHD10*01 ORF (7) 13 M4711 IMGT000109 [1] MAP 750766-750833
IMGT notes: ↑
  1. noncanonical 5'D-NONAMER: ggattcggg instead of gttttttga, noncanonical 3'D-HEPTAMER: cacagcc instead of cacagtg
  2. noncanonical 5'D-NONAMER: gattcgggc instead of gttttttga
  3. noncanonical 5'D-NONAMER: ggattcggg instead of gttttttga
  4. noncanonical 5'D-NONAMER: ggttcttgt instead of gttttttga, unexpected 5'D-SPACER length: 16 nt instead of 12 nt, noncanonical 5'D-HEPTAMER: agcagcg instead of cactgtg, noncanonical 3'D-NONAMER: caaagagcc instead of cgaaaaccc
  5. noncanonical 5'D-NONAMER: ccatattgt instead of gttttttga, noncanonical 3'D-NONAMER: ctcaaaacc instead of cgaaaaccc
  6. noncanonical 5'D-NONAMER: ggactctgt instead of gttttttga, noncanonical 5'D-HEPTAMER: cagggtg instead of cactgtg, noncanonical 3'D-NONAMER: ataaaaacc instead of cgaaaaccc
  7. noncanonical 5'D-NONAMER: gcttttggc instead of gttttttga
IMGT references: ↑
  1. Karimi,K. et al., The first chromosome-level genome assembly for American mink, Unpublished.