Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of American mink (Neogale vison) IGHV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		Clone namesIsolateAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGHV1IGHV1-15 IGHV1-15*01 P (1) 13 M4711 IMGT000109 [1] MAP 409167-409639
IGHV1IGHV1-19 IGHV1-19*01 F 13 M4711 IMGT000109 [1] MAP 291729-292202
IGHV1IGHV1-22 IGHV1-22*01 F 13 M4711 IMGT000109 [1] MAP 261649-262122
IGHV3IGHV3-2 IGHV3-2*01 F 13 M4711 IMGT000109 [1] MAP 673509-674003
IGHV3IGHV3-3 IGHV3-3*01 F 13 M4711 IMGT000109 [1] MAP 663825-664319
IGHV3IGHV3-4 IGHV3-4*01 P (2) 13 M4711 IMGT000109 [1] MAP 653295-653587 *
IGHV3IGHV3-5 IGHV3-5*01 F 13 M4711 IMGT000109 [1] MAP 641496-641990
IGHV3IGHV3-6 IGHV3-6*01 P (3) 13 M4711 IMGT000109 [1] MAP 634659-635486
IGHV3IGHV3-8 IGHV3-8*01 P (4) 13 M4711 IMGT000109 [1] MAP complement(618766-619061) *
IGHV3IGHV3-9 IGHV3-9*01 F 13 M4711 IMGT000109 [1] MAP 599803-600297
IGHV3IGHV3-9D IGHV3-9D*01 F 13 M4711 IMGT000109 [1] MAP 522637-523131
IGHV3IGHV3-9N IGHV3-9N*01 F 13 M4711 IMGT000109 [1] MAP 453019-453513
IGHV3IGHV3-11 IGHV3-11*01 P (5) 13 M4711 IMGT000109 [1] MAP 577161-577734
IGHV3IGHV3-11D IGHV3-11D*01 P (5) 13 M4711 IMGT000109 [1] MAP 500340-500913
IGHV3IGHV3-11N IGHV3-11N*01 P (5) 13 M4711 IMGT000109 [1] MAP 430719-431292
IGHV3IGHV3-12 IGHV3-12*01 F 13 M4711 IMGT000109 [1] MAP 570953-571447
IGHV3IGHV3-13 IGHV3-13*01 F 13 M4711 IMGT000109 [1] MAP 494124-494618
IGHV3IGHV3-14 IGHV3-14*01 F 13 M4711 IMGT000109 [1] MAP 424614-425108
IGHV3IGHV3-16 IGHV3-16*01 P (6) 13 M4711 IMGT000109 [1] MAP 389758-390250
IGHV3IGHV3-17 IGHV3-17*01 F 13 M4711 IMGT000109 [1] MAP 355394-355888
IGHV3IGHV3-20 IGHV3-20*01 P (7) 13 M4711 IMGT000109 [1] MAP 283520-284005
IGHV3IGHV3-21 IGHV3-21*01 P (8) 13 M4711 IMGT000109 [1] MAP 276764-277257
IGHV3IGHV3-23 IGHV3-23*01 P (9) 13 M4711 IMGT000109 [1] MAP 252951-253437
IGHV3IGHV3-25 IGHV3-25*01 F 13 M4711 IMGT000109 [1] MAP 235580-236074
IGHV3IGHV3-26 IGHV3-26*01 F 13 M4711 IMGT000109 [1] MAP 225133-225627
IGHV3IGHV3-27 IGHV3-27*01 F 13 M4711 IMGT000109 [1] MAP 194013-194507
IGHV3IGHV3-28 IGHV3-28*01 P (10) 13 M4711 IMGT000109 [1] MAP 183808-184304
IGHV3IGHV3-30 IGHV3-30*01 F 13 M4711 IMGT000109 [1] MAP 155330-155825
IGHV3IGHV3-31 IGHV3-31*01 F 13 M4711 IMGT000109 [1] MAP 142558-143055
IGHV3IGHV3-32 IGHV3-32*01 P (6) 13 M4711 IMGT000109 [1] MAP 137427-137922
IGHV3IGHV3-33 IGHV3-33*01 P (10) 13 M4711 IMGT000109 [1] MAP 128710-129204
IGHV3IGHV3-34 IGHV3-34*01 F 13 M4711 IMGT000109 [1] MAP 112862-113356
IGHV3IGHV3-35 IGHV3-35*01 F 13 M4711 IMGT000109 [1] MAP 85855-86349
IGHV3IGHV3-36 IGHV3-36*01 P (11) 13 M4711 IMGT000109 [1] MAP <57710-57951 *
IGHV3IGHV3-37 IGHV3-37*01 P (12) 13 M4711 IMGT000109 [1] MAP 43792-44287
IGHV3IGHV3-38 IGHV3-38*01 F 13 M4711 IMGT000109 [1] MAP 32056-32530
IGHV3IGHV3-40 IGHV3-40*01 P (3) 13 M4711 IMGT000109 [1] MAP 10001-10499
IGHV4IGHV4-1 IGHV4-1*01 F 13 M4711 IMGT000109 [1] MAP 685967-686433
IGHV7IGHV7-10 IGHV7-10*01 F 13 M4711 IMGT000109 [1] MAP 582925-583401
IGHV7IGHV7-10D IGHV7-10D*01 F 13 M4711 IMGT000109 [1] MAP 506104-506580
IGHV7IGHV7-10N IGHV7-10N*01 F 13 M4711 IMGT000109 [1] MAP 436483-436959
IGHV7IGHV7-18 IGHV7-18*01 F 13 M4711 IMGT000109 [1] MAP 309118-309594
IGHV7IGHV7-39 IGHV7-39*01 P (13) 13 M4711 IMGT000109 [1] MAP 15776-16254
IMGT notes: ↑
  1. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  2. no L-PART1
  3. frameshifts in V-REGION: several insertions and deletions
  4. no L-PART1, STOP-CODON in V-REGION: position 75
  5. frameshift in L-PART1: deletion of 8 nt causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  6. frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  7. frameshifts in V-REGION: deletion of 5 nt in FR1-IMGT
  8. STOP-CODON in L-PART1, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  9. frameshift in V-REGION: deletion of 4 nt in FR1-IMGT
  10. STOP-CODON in V-REGION: position 37
  11. no L-PART1, no L-PART2
  12. no INIT-CODON: Val instead of Met, frameshift in V-REGION: insertion of 1 nt in FR1-IMGT
  13. no 1st-CYS: STOP-CODON instead of Cys, several STOP-CODON in V-REGION
IMGT references: ↑
  1. Karimi,K. et al., The first chromosome-level genome assembly for American mink, Unpublished.