Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of dog (Canis lupus familiaris) IGHV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGHV1IGHV1-4-1 IGHV1-4-1*01 P (1) 8 CM000008.3 boxer IMGT000001 MAP [1] complement(1187832-1188308)
IGHV1IGHV1-15 IGHV1-15*01 P (2) 8 CM000008.3 boxer IMGT000001 MAP [1] 976617-977082
IGHV1IGHV1-17 IGHV1-17*01 P (1) 8 CM000008.3 boxer IMGT000001 MAP [1] 944078-944547
IGHV1IGHV1-30 IGHV1-30*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 713976-714449
IGHV3IGHV3-2 IGHV3-2*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 1233683-1234177
IGHV3IGHV3-3 IGHV3-3*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 1215540-1216033
IGHV3IGHV3-4 IGHV3-4*01 P (3) 8 CM000008.3 boxer IMGT000001 MAP [1] complement(1202908-1203402)
IGHV3IGHV3-5 IGHV3-5*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 1162850-1163342
IGHV3IGHV3-5-1 IGHV3-5-1*01 P (4) 8 CM000008.3 boxer IMGT000001 MAP [1] 1149053->1149221 *
IGHV3IGHV3-6 IGHV3-6*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 1135049-1135540
IGHV3IGHV3-7 IGHV3-7*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 1118619-1119113
IGHV3IGHV3-8 IGHV3-8*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 1112099-1112593
IGHV3IGHV3-9 IGHV3-9*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 1086793-1087340
IGHV3IGHV3-10 IGHV3-10*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 1076923-1077415
IGHV3IGHV3-11 IGHV3-11*01 P (5) 8 CM000008.3 boxer IMGT000001 MAP [1] 1055532-1056010
IGHV3IGHV3-12 IGHV3-12*01 P (6) 8 CM000008.3 boxer IMGT000001 MAP [1] 1036298-1036791
IGHV3IGHV3-13 IGHV3-13*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 1005003-1005497
IGHV3IGHV3-14 IGHV3-14*01 P (2) 8 CM000008.3 boxer IMGT000001 MAP [1] 999532-1000026
IGHV3IGHV3-16 IGHV3-16*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 965686-966187
IGHV3IGHV3-18 IGHV3-18*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 906675-907171
IGHV3IGHV3-19 IGHV3-19*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 884372-884863
IGHV3IGHV3-20 IGHV3-20*01 P (7) 8 CM000008.3 boxer IMGT000001 MAP [1] 860068-860570
IGHV3IGHV3-21 IGHV3-21*01 P (2) 8 CM000008.3 boxer IMGT000001 MAP [1] 841432-841926
IGHV3IGHV3-21-1 IGHV3-21-1*01 P (8) 8 CM000008.3 boxer IMGT000001 MAP [1] 828822-829500
IGHV3IGHV3-22 IGHV3-22*01 P (9) 8 CM000008.3 boxer IMGT000001 MAP [1] 821237-821727
IGHV3IGHV3-23 IGHV3-23*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 805613-806106
IGHV3IGHV3-24 IGHV3-24*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 793854-794348
IGHV3IGHV3-25 IGHV3-25*01 P (10) 8 CM000008.3 boxer IMGT000001 MAP [1] 784853-785346
IGHV3IGHV3-26 IGHV3-26*01 P (2) 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 762602-763096
IGHV3IGHV3-27 IGHV3-27*01 P (11) 8 CM000008.3 boxer IMGT000001 MAP [1] 751357-751853
IGHV3IGHV3-28 IGHV3-28*01 P (12) 8 CM000008.3 boxer IMGT000001 MAP [1] 738052-738546
IGHV3IGHV3-29 IGHV3-29*01 P (13) 8 CM000008.3 boxer IMGT000001 MAP [1] 724240-724741
IGHV3IGHV3-31 IGHV3-31*01 P (14) 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 706363-706856
IGHV3IGHV3-32 IGHV3-32*01 ORF (15) 8 CM000008.3 boxer IMGT000001 MAP [1] 695518-696012
IGHV3IGHV3-33 IGHV3-33*01 P (16) 8 CM000008.3 boxer IMGT000001 MAP [1] 692062-692554
IGHV3IGHV3-34 IGHV3-34*01 F (17) 8 CM000008.3 boxer IMGT000001 MAP [1] 685238-685352 *
IGHV3IGHV3-35 IGHV3-35*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 676131-676625
IGHV3IGHV3-36 IGHV3-36*01 P (2) 8 CM000008.3 boxer IMGT000001 MAP [1] 671792-672286
IGHV3IGHV3-37 IGHV3-37*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 652043-652534
IGHV3IGHV3-38 IGHV3-38*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 632508-633002
IGHV3IGHV3-39 IGHV3-39*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 616586-617080
IGHV3IGHV3-40 IGHV3-40*01 P (7) 8 CM000008.3 boxer IMGT000001 MAP [1] 608251-608844
IGHV3IGHV3-41 IGHV3-41*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 585887-586381
IGHV3IGHV3-42 IGHV3-42*01 P (18) 8 CM000008.3 boxer IMGT000001 MAP [1] 569255-569748
IGHV3IGHV3-43 IGHV3-43*01 P (2) 8 CM000008.3 boxer IMGT000001 MAP [1] 558475-558969
IGHV3IGHV3-44 IGHV3-44*01 ORF (19) 8 CM000008.3 boxer IMGT000001 MAP [1] 542281-542775
IGHV3IGHV3-45 IGHV3-45*01 P (20) 8 CM000008.3 boxer IMGT000001 MAP [1] 536631-537123
IGHV3IGHV3-46 IGHV3-46*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 527581-528070
IGHV3IGHV3-47 IGHV3-47*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 520557-521048
IGHV3IGHV3-47-1 IGHV3-47-1*01 P (2) 8 CM000008.3 boxer IMGT000001 MAP [1] 497429-497919
IGHV3IGHV3-48 IGHV3-48*01 P (21) 8 CM000008.3 boxer IMGT000001 MAP [1] 457564-457858 *
IGHV3IGHV3-49 IGHV3-49*01 P (22) 8 CM000008.3 boxer IMGT000001 MAP [1] 441978-442660
IGHV3IGHV3-50 IGHV3-50*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 433982-434476
IGHV3IGHV3-51 IGHV3-51*01 P (23) 8 CM000008.3 boxer IMGT000001 MAP [1] 426279-426768
IGHV3IGHV3-52 IGHV3-52*01 P (2) 8 CM000008.3 boxer IMGT000001 MAP [1] 420817-421311
IGHV3IGHV3-53 IGHV3-53*01 P (24) 8 CM000008.3 boxer IMGT000001 MAP [1] 405652-406294
IGHV3IGHV3-54 IGHV3-54*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 385519-386014
IGHV3IGHV3-55 IGHV3-55*01 P (6) 8 CM000008.3 boxer IMGT000001 MAP [1] 366068-366561
IGHV3IGHV3-56 IGHV3-56*01 P (25) 8 CM000008.3 boxer IMGT000001 MAP [1] 332441-332882
IGHV3IGHV3-57 IGHV3-57*01 P (26) 8 CM000008.3 boxer IMGT000001 MAP [1] 328560-329245
IGHV3IGHV3-58 IGHV3-58*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 315746-316240
IGHV3IGHV3-59 IGHV3-59*01 P (27) 8 CM000008.3 boxer IMGT000001 MAP [1] 303944-304435
IGHV3IGHV3-60 IGHV3-60*01 P (28) 8 CM000008.3 boxer IMGT000001 MAP [1] 297545-298024
IGHV3IGHV3-61 IGHV3-61*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 291071-291565
IGHV3IGHV3-62 IGHV3-62*01 P (29) 8 CM000008.3 boxer IMGT000001 MAP [1] 279119-279609
IGHV3IGHV3-63 IGHV3-63*01 P (21) 8 CM000008.3 boxer IMGT000001 MAP [1] 259571-259865 *
IGHV3IGHV3-64 IGHV3-64*01 P (30) 8 CM000008.3 boxer IMGT000001 MAP [1] 244006-244483
IGHV3IGHV3-65 IGHV3-65*01 P (31) 8 CM000008.3 boxer IMGT000001 MAP [1] 235999-236485
IGHV3IGHV3-66 IGHV3-66*01 P (32) 8 CM000008.3 boxer IMGT000001 MAP [1] 226646-227142
IGHV3IGHV3-67 IGHV3-67*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 219573-220063
IGHV3IGHV3-68 IGHV3-68*01 P (1) 8 CM000008.3 boxer IMGT000001 MAP [1] 214304-214797
IGHV3IGHV3-69 IGHV3-69*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 203795-204283
IGHV3IGHV3-70 IGHV3-70*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 192048-192542
IGHV3IGHV3-71 IGHV3-71*01 P (33) 8 CM000008.3 boxer IMGT000001 MAP [1] 177869-178346
IGHV3IGHV3-72 IGHV3-72*01 P (2) 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 170071-170565
IGHV3IGHV3-73 IGHV3-73*01 P (34) 8 CM000008.3 boxer IMGT000001 MAP [1] 163277-163768
IGHV3IGHV3-74 IGHV3-74*01 P (35) 8 CM000008.3 boxer IMGT000001 MAP [1] 138647-139140
IGHV3IGHV3-75 IGHV3-75*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 127428-127919
IGHV3IGHV3-76 IGHV3-76*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 105726-106217
IGHV3IGHV3-77 IGHV3-77*01 P (36) 8 CM000008.3 boxer IMGT000001 MAP [1] 74807-75088 *
IGHV3IGHV3-78 IGHV3-78*01 P (2) 8 CM000008.3 boxer IMGT000001 MAP [1] 59229-59709
IGHV3IGHV3-79 IGHV3-79*01 P (36) 8 CM000008.3 boxer IMGT000001 MAP [1] 50533-50828 *
IGHV3IGHV3-80 IGHV3-80*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 47672-48162
IGHV3IGHV3-81 IGHV3-81*01 F 8
RTPr
++
 CM000008.3 boxer IMGT000001 MAP [1] 29149-29641
IGHV3IGHV3-82 IGHV3-82*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 23861-24355
IGHV3IGHV3-83 IGHV3-83*01 P (37) 8 CM000008.3 boxer IMGT000001 MAP [1] 851-1346
IGHV4IGHV4-1 IGHV4-1*01 F 8 CM000008.3 boxer IMGT000001 MAP [1] 1243239-1243699
IMGT notes: ↑
  1. STOP-CODON in FR2-IMGT, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  2. STOP-CODON in V-REGION
  3. Frameshift in L-PART1, frameshift in V-REGION: deletion of 1 nt is FR1-IMGT
  4. Frameshift in V-REGION: deletion of 1 nt in FR1-IMGT, truncated in 3', No V-RS
  5. Frameshift in V-REGION: deletion of 5 nt in FR1-IMGT
  6. Frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  7. Frameshift in V-REGION
  8. STOP-CODON in V-REGION, AA 97 to 100 deleted
  9. Frameshift in V-REGION: deletion 1 nt in FR1-IMGT
  10. STOP-CODON in L-PART1, frameshift in L-PART2
  11. Frameshift in V-REGION: insertion 4 nt FR3-IMGT
  12. Frameshift in V-REGION: insertion 1 nt FR1-IMGT, deletion 1 nt FR2-IMGT
  13. STOP-CODON in L-PART1, frameshift in V-REGION: insertion 7 nt in FR1-IMGT
  14. Frameshift in L-PART1
  15. noncanonical V-HEPTAMER tacagtg instead of cacagtg
  16. Frameshift in L-PART2
  17. V-GENE is truncated in 5'
  18. Frameshifts in L-PART1, frameshift V-REGION: insertion of 1 nt in FR1-IMGT
  19. no CONSERVED-TRP: Cys instead of Trp, noncanonical DONOR-SPLICE nga instead of ngt
  20. Frameshift in L-PART1, No INIT-CODON
  21. No L-PART1, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  22. Frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  23. Frameshift in L-PART1, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  24. STOP-CODON in L-PART1, frameshift in V-REGION: deletion on 1 nt in FR1-IMGT
  25. Frameshift in L-PART1, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT, deletion in FR3-IMGT AA 85 to 98 missing
  26. Frameshift in L-PART1, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  27. Frameshift in V-REGION: deletion of 2 nt in FR2-IMGT
  28. Deletion in FR3-IMGT AA 97 to 100 are missing
  29. STOP-CODON in V-REGION, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  30. Frameshift in V-REGION: deletion of 5 nt in FR3-IMGT
  31. STOP-CODON in FR2-IMGT, frameshift in L-PART1 and in V-REGION: deletion of 1nt in FR3-IMGT
  32. Frameshift in L-PART1, frameshift in V-REGION: deletion of 1nt in CDR1-IMGT and 1 nt in FR2-IMGT
  33. Frameshift in V-REGION:deletion of 2 nt in FR3-IMGT
  34. Frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  35. Frameshift in V-REGION:deletion of 1 nt in FR3-IMGT
  36. Frameshift in V-REGION, no L-PART1
  37. STOP-CODON in L-PART1
IMGT references: ↑
  1. Martin, Jolyon et al. “Comprehensive annotation and evolutionary insights into the canine (Canis lupus familiaris) antigen receptor loci.” Immunogenetics vol. 70,4 (2018): 223-236. DOI: 10.1007/s00251-017-1028-0