Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.

Several pairs of genes have high percentage of identity of their V-REGION, reaching 100% of identity for the functional IGLV1-62*01 and IGLV1-47*01 genes and for the pseudogenes IGLV5-49*01 and IGLV5-18*01, and reaching 99% of identity for the functional IGLV1-64*01 and IGLV1-17*01 genes and for the pseudogenes IGLV5-65*01 and IGLV5-49*01, IGLV9-66*01 and IGLV9-50*01. Arbitrarily these sequences are assigned to the gene with the smallest number.

Gene table of goat (Capra hircus) IGLV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGLV1IGLV1-16 IGLV1-16*01 P (1) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 347868-348361
IGLV1IGLV1-17 IGLV1-17*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 342703-343206
IGLV1IGLV1-21 IGLV1-21*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 325288-325782
IGLV1IGLV1-23 IGLV1-23*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 308850-309350
IGLV1IGLV1-27 IGLV1-27*01 P (2) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 283968-284468
IGLV1IGLV1-30 IGLV1-30*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 269923-270421
IGLV1IGLV1-31 IGLV1-31*01 P (3) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 266771-267060 *
IGLV1IGLV1-34 IGLV1-34*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 250393-250895
IGLV1IGLV1-37 IGLV1-37*01 P (4) 17 CM004578.1 San Clemente IMGT000033 MAP [1] complement(236059-236562)
IGLV1IGLV1-38 IGLV1-38*01 P (5) 17 CM004578.1 San Clemente IMGT000033 MAP [1] complement(230922-231416)
IGLV1IGLV1-39 IGLV1-39*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] complement(227342-227845)
IGLV1IGLV1-42 IGLV1-42*01 P (5) 17 CM004578.1 San Clemente IMGT000033 MAP [1] complement(218667-219163)
IGLV1IGLV1-44 IGLV1-44*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] complement(210064-210564)
IGLV1IGLV1-46 IGLV1-46*01 P (6) 17 CM004578.1 San Clemente IMGT000033 MAP [1] complement(207144-207640)
IGLV1IGLV1-47 IGLV1-47*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] complement(203509-204011)
IGLV1IGLV1-53 IGLV1-53*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 181515-182016
IGLV1IGLV1-54 IGLV1-54*01 P (7) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 176865-177359
IGLV1IGLV1-57 IGLV1-57*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 166608-167106
IGLV1IGLV1-59 IGLV1-59*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 159516-160019
IGLV1IGLV1-62 IGLV1-62*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 152181-152683
IGLV1IGLV1-63 IGLV1-63*01 P (8) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 148527-149032
IGLV1IGLV1-64 IGLV1-64*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 143368-143871
IGLV1IGLV1-69 IGLV1-69*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 122283-122786
IGLV1IGLV1-70 IGLV1-70*01 P (9) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 118974-119467
IGLV1IGLV1-72 IGLV1-72*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 111980-112477
IGLV2IGLV2-10 IGLV2-10*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 495851-496358
IGLV2IGLV2-11 IGLV2-11*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 472491-472999
IGLV2IGLV2-12 IGLV2-12*01 P (10) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 457612-458118
IGLV2IGLV2-13 IGLV2-13*01 P (10) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 450022-450529
IGLV2IGLV2-14 IGLV2-14*01 P (11) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 446515-447020
IGLV3IGLV3-1 IGLV3-1*01 P (12) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 546618-547362
IGLV3IGLV3-2 IGLV3-2*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 542524-543051
IGLV3IGLV3-3 IGLV3-3*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 537751-538296
IGLV3IGLV3-4 IGLV3-4*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 529387-529915
IGLV3IGLV3-6 IGLV3-6*01 P (13) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 522400-522687 *
IGLV3IGLV3-7 IGLV3-7*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 516414-516951
IGLV3IGLV3-8 IGLV3-8*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 511595-512132
IGLV3IGLV3-9 IGLV3-9*01 P (14) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 504453-504980
IGLV4IGLV4-5 IGLV4-5*01 P (15) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 525566-526089
IGLV5IGLV5-18 IGLV5-18*01 P (16) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 339699-340795
IGLV5IGLV5-22 IGLV5-22*01 P (17) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 320298-321740
IGLV5IGLV5-25 IGLV5-25*01 P (18) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 299941-300450
IGLV5IGLV5-43 IGLV5-43*01 P (17) 17 CM004578.1 San Clemente IMGT000033 MAP [1] complement(214032-215495)
IGLV5IGLV5-49 IGLV5-49*01 P (19) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 199621->199750 *
IGLV5IGLV5-55 IGLV5-55*01 P (20) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 170704-171233
IGLV5IGLV5-58 IGLV5-58*01 P (21) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 164346-164858
IGLV5IGLV5-60 IGLV5-60*01 P (22) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 155436-155967
IGLV5IGLV5-65 IGLV5-65*01 P (23) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 140412-141499
IGLV5IGLV5-71 IGLV5-71*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 114753-115283
IGLV5IGLV5-73 IGLV5-73*01 P (20) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 107078-107602
IGLV8IGLV8-24 IGLV8-24*01 P (2) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 305593-306078
IGLV8IGLV8-28 IGLV8-28*01 P (24) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 276085-276576
IGLV8IGLV8-32 IGLV8-32*01 P (25) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 264495-264974
IGLV8IGLV8-33 IGLV8-33*01 P (26) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 256813-257304
IGLV8IGLV8-36 IGLV8-36*01 P (27) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 236982-237475
IGLV8IGLV8-41 IGLV8-41*01 P (2) 17 CM004578.1 San Clemente IMGT000033 MAP [1] complement(221915-222400)
IGLV8IGLV8-51 IGLV8-51*01 F 17 CM004578.1 San Clemente IMGT000033 MAP [1] 187674-188167
IGLV8IGLV8-67 IGLV8-67*01 P (28) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 129060-129552
IGLV9IGLV9-19 IGLV9-19*01 P (29) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 337794-338311
IGLV9IGLV9-35 IGLV9-35*01 P (30) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 246210-246727
IGLV9IGLV9-50 IGLV9-50*01 P (31) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 196991-197494
IGLV9IGLV9-66 IGLV9-66*01 P (32) 17 CM004578.1 San Clemente IMGT000033 MAP [1] 138525-139027
IMGT notes: ↑
  1. frameshift in L-PART1, frameshift in V-REGION: deletion of 2 nt in FR1-IMGT
  2. several STOP-CODON in V-REGION
  3. no L-PART1, frameshifts in V-REGION: deletion of 2 nt in FR1-IMGT and 1 nt in FR3-IMGT
  4. frameshift in L-PART1, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  5. frameshift in V-REGION: deletion of 2 nt in FR1-IMGT
  6. frameshift in V-REGION: deletion of 4 nt in CDR1-IMGT
  7. frameshift in L-PART1, STOP-CODON in V-REGION: position 66
  8. frameshift in L-PART1, frameshifts in V-REGION: several insertions and deletions
  9. frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  10. no INIT-CODON: Val instead of Met
  11. STOP-CODON in V-REGION: position 1
  12. frameshift in L-PART2, frameshifts in V-REGION: deletion of 1 nt in FR1-IMGT and in FR2-IMGT
  13. STOP-CODON in V-REGION: position 42, frameshifts in V-REGION: several insertions and deletions, no V-RS
  14. frameshift in V-REGION: deletion of 1 nt in CDR2-IMGT
  15. no INIT-CODON: Val instead of Met, frameshit in L-PART1, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  16. frameshift in V-REGION: deletion of 1 nt in CDR1-IMGT
  17. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  18. no INIT-CODON: Val instead of Met, frameshift in L-PART2, STOP-CODON in V-REGION: position 52
  19. no L-PART1, frameshift in V-REGION: deletion of 1 nt in CDR1-IMGT
  20. frameshift in L-PART1
  21. no INIT-CODON: Val instead of Met, frameshifts in V-REGION: several insertions and deletions
  22. no INIT-CODON: Val instead of Met, frameshift in L-PART1, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT, several STOP-CODON in V-REGION
  23. no INIT-CODON: Leu instead of Met, frameshifts in V-REGION: deletion of 1 nt in CDR1-IMGT and in FR2-IMGT
  24. no INIT-CODON: Glu instead of Met, STOP-CODON in V-REGION: position 48
  25. no INIT-CODON: Ala instead of Met, frameshifts in V-REGION: several deletions
  26. frameshifts in V-REGION: insertion of 4 nt in FR1-IMGT and deletion of 5 nt in CDR1-IMGT
  27. frameshift in L-PART2, frameshifts in V-REGION: several insertions and deletions
  28. STOP-CODON in V-REGION: position 48, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  29. no INIT-CODON: Ser instead of Met, STOP-CODON in V-REGION: position 9, frameshifts in V-REGION: deletion of 4 nt in FR3-IMGT
  30. no INIT-CODON: Ser instead of Met, STOP-CODON in V-REGION: position 29, frameshifts in V-REGION: several deletions
  31. no INIT-CODON: Ser instead of Met, frameshifts in V-REGION: deletion of 4 nt and insertion of 1 nt in FR3-IMGT, STOP-CODON in V-REGION: position 116
  32. frameshifts in V-REGION: deletion of 4 nt in FR3-IMGT
IMGT references: ↑
  1. Schwartz, John C et al. “The antibody loci of the domestic goat (Capra hircus)." Immunogenetics vol. 70,5 (2018): 317-326. DOI: 10.1007/s00251-017-1033-3