Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
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Gene table of bovine (Bos taurus) TRGC IMGT group:
IMGT gene name
IMGT allele name
Score for
IMGT allele
confirmation
Fct
Chromosomosal
localization
Exons
R T Pr
IMGT/LIGM-DB reference sequences
IMGT/LIGM-DB sequences from the literature
Clone names
Breed
Accession
numbers
Positions
in the sequence
Secondary
accession
numbers
Clone names
Breed
Accession
numbers
Positions
in the sequence
TRGC1TRGC1*01F (1)4q1.5-2.2EX1BTG2HolsteinD90409 [7]159-488
TRGC1TRGC1*01F (1)4q1.5-2.2EX2ABTG2HolsteinD90409 [7]489-593
TRGC1TRGC1*01F (1)4q1.5-2.2EX2BBTG2HolsteinD90409 [7]594-641
TRGC1TRGC1*01F (1)4q1.5-2.2EX2CBTG2HolsteinD90409 [7]642-680
TRGC1TRGC1*01F (2)4q1.5-2.2EX3BTG2HolsteinD90409 [7] (4)681-806
TRGC1TRGC1*02F4q1.5-2.2EX1BTG9HolsteinD90410 [7]133-462
TRGC1TRGC1*02F4q1.5-2.2EX2ABTG9HolsteinD90410 [7]463-567
TRGC1TRGC1*02F4q1.5-2.2EX2BBTG9HolsteinD90410 [7]568-615
TRGC1TRGC1*02F4q1.5-2.2EX2CBTG9HolsteinD90410 [7]616-654
TRGC1TRGC1*02F4q1.5-2.2EX3BTG9HolsteinD90410 [7]655-780
TRGC1TRGC1*03F4q1.5-2.2EX1BTG20HolsteinD90413 [7]133-462BTGT4HolsteinX63682 [5]197-526
BTGC8HolsteinX63683 [5]158-487
BTGT2HolsteinX63684 [5]346-675
TRGC1TRGC1*03F4q1.5-2.2EX2ABTG20HolsteinD90413 [7]463-567BTGT4HolsteinX63682 [5]527-631
BTGC8HolsteinX63683 [5]488-592
BTGT2HolsteinX63684 [5]676-780
TRGC1TRGC1*03F4q1.5-2.2EX2BBTG20HolsteinD90413 [7]568-615BTGT4HolsteinX63682 [5]632-679
BTGC8HolsteinX63683 [5]593-640
BTGT2HolsteinX63684 [5]781-828
TRGC1TRGC1*03F4q1.5-2.2EX2CBTG20HolsteinD90413 [7]616-654BTGT4HolsteinX63682 [5]680-718
BTGC8HolsteinX63683 [5]641-679
BTGT2HolsteinX63684 [5]829-867
TRGC1TRGC1*03F4q1.5-2.2EX3BTG20HolsteinD90413 [7]655-780BTGT4HolsteinX63682 [5]719-844
BTGC8HolsteinX63683 [5]680-805
BTGT2HolsteinX63684 [5]868-993
TRGC1TRGC1*04F4q1.5-2.2EX1
RTPr
+
TRGC1AY644518 [1,2] °108159-108488
TRGC1TRGC1*04F4q1.5-2.2EX2A
RTPr
+
TRGC1AY644518 [1,2] °110810-110914
TRGC1TRGC1*04F4q1.5-2.2EX2B
RTPr
+
TRGC1AY644518 [1,2] °111202-111249
TRGC1TRGC1*04F4q1.5-2.2EX2C
RTPr
+
TRGC1AY644518 [1,2] °113189-113227
TRGC1TRGC1*04F4q1.5-2.2EX3
RTPr
+
TRGC1AY644518 [1,2] °115342-115466
TRGC2TRGC2*01F4q1.5-2.2EX1BTG15HolsteinD90411 [7]158-487
TRGC2TRGC2*01F4q1.5-2.2EX2ABTG15HolsteinD90411 [7]488-562
TRGC2TRGC2*01F4q1.5-2.2EX2BBTG15HolsteinD90411 [7]563-607
TRGC2TRGC2*01F4q1.5-2.2EX2CBTG15HolsteinD90411 [7]608-646
TRGC2TRGC2*01F4q1.5-2.2EX3BTG15HolsteinD90411 [7]647-790
TRGC2TRGC2*02F4q1.5-2.2EX1BTG15HolsteinD90412 [7] (5)158-486
TRGC2TRGC2*02F4q1.5-2.2EX2ABTG15HolsteinD90412 [7] (5)487-561
TRGC2TRGC2*02F4q1.5-2.2EX2BBTG15HolsteinD90412 [7] (5)562-606
TRGC2TRGC2*02F4q1.5-2.2EX2CBTG15HolsteinD90412 [7] (5)607-639
TRGC2TRGC2*02F4q1.5-2.2EX3BTG15HolsteinD90412 [7] (5)640-780
TRGC2TRGC2*03F4q1.5-2.2EX1
RTPr
++
BTG25HolsteinD90415 [7]133-462GTG32HolsteinD90417 [7] °158-487
TRGC2TRGC2*03F4q1.5-2.2EX2A
RTPr
++
BTG25HolsteinD90415 [7]463-537GTG32HolsteinD90417 [7] °488-562
TRGC2TRGC2*03F4q1.5-2.2EX2B
RTPr
++
BTG25HolsteinD90415 [7]538-582GTG32HolsteinD90417 [7] °563-607
TRGC2TRGC2*03F4q1.5-2.2EX2C
RTPr
++
BTG25HolsteinD90415 [7]583-621GTG32HolsteinD90417 [7] °608-646
TRGC2TRGC2*03F4q1.5-2.2EX3
RTPr
++
BTG25HolsteinD90415 [7]622-765GTG32HolsteinD90417 [7] °647-790
TRGC2TRGC2*04F4q1.5-2.2EX1BTG27HolsteinD90416 [7]141-470
TRGC2TRGC2*04F4q1.5-2.2EX2ABTG27HolsteinD90416 [7]471-545
TRGC2TRGC2*04F4q1.5-2.2EX2BBTG27HolsteinD90416 [7]546-590
TRGC2TRGC2*04F4q1.5-2.2EX2CBTG27HolsteinD90416 [7]591-629
TRGC2TRGC2*04F4q1.5-2.2EX3BTG27HolsteinD90416 [7]630-773
TRGC2TRGC2*05F4q1.5-2.2EX1
RTPr
+
TRGC2AY644518 [1,2] °141448-141777
TRGC2TRGC2*05F4q1.5-2.2EX2A
RTPr
+
TRGC2AY644518 [1,2] °144541-144615
TRGC2TRGC2*05F4q1.5-2.2EX2B
RTPr
+
TRGC2AY644518 [1,2] °144893-144937
TRGC2TRGC2*05F4q1.5-2.2EX2C
RTPr
+
TRGC2AY644518 [1,2] °147598-147636
TRGC2TRGC2*05F4q1.5-2.2EX3
RTPr
+
TRGC2AY644518 [1,2] °149766-149908
TRGC3TRGC3*01F4q3.1EX1BTG24HolsteinD90414 [7]401-730
TRGC3TRGC3*01F4q3.1EX2ABTG24HolsteinD90414 [7]731-787
TRGC3TRGC3*01F4q3.1EX2CBTG24HolsteinD90414 [7]788-841
TRGC3TRGC3*01F4q3.1EX3BTG24HolsteinD90414 [7]842-982
TRGC3TRGC3*02F4q3.1EX1TRGC3AY644517 [3]131190-131519
TRGC3TRGC3*02F4q3.1EX2ATRGC3AY644517 [3]133153-133209
TRGC3TRGC3*02F4q3.1EX2CTRGC3AY644517 [3]133999-134052
TRGC3TRGC3*02F4q3.1EX3TRGC3AY644517 [3]135472-135611
TRGC4TRGC4*01F4q3.1EX1BTGT1HolsteinX63680 [5]146-475
TRGC4TRGC4*01F4q3.1EX2ABTGT1HolsteinX63680 [5]476-535
TRGC4TRGC4*01F4q3.1EX2BBTGT1HolsteinX63680 [5]536-583
TRGC4TRGC4*01F4q3.1EX2CBTGT1HolsteinX63680 [5]584-634
TRGC4TRGC4*01F4q3.1EX3BTGT1HolsteinX63680 [5]635-775
TRGC4TRGC4*02F4q3.1EX1TRGC4AY644517 [3]162894-163223
TRGC4TRGC4*02F4q3.1EX2ATRGC4AY644517 [3]167787-167846
TRGC4TRGC4*02F4q3.1EX2BTRGC4AY644517 [3]168159-168206
TRGC4TRGC4*02F4q3.1EX2CTRGC4AY644517 [3]168493-168543
TRGC4TRGC4*02F4q3.1EX3TRGC4AY644517 [3]170876-171015
TRGC5TRGC5*01(F)4q3.1EX1
RTPr
++
TRGC5AY735449 [6] #c418-747
TRGC5TRGC5*01(F)4q3.1EX2A
RTPr
++
TRGC5AY735449 [6] #c748-783
TRGC5TRGC5*01(F)4q3.1EX3
RTPr
++
TRGC5AY735449 [6] #c784-924
TRGC5TRGC5*02F4q3.1EX1TRGC5AY644517 [3]<1-215
TRGC5TRGC5*02F4q3.1EX2ATRGC5AY644517 [3]5617-5652
TRGC5TRGC5*02F4q3.1EX3TRGC5AY644517 [3]7233-7372
TRGC5TRGC5*03F4q3.1EX1
RTPr
++
TRGC5DQ179593 [4] #c1-330
TRGC5TRGC5*03F4q3.1EX2A
RTPr
++
TRGC5DQ179593 [4] #c331-366
TRGC5TRGC5*03F4q3.1EX3
RTPr
++
TRGC5DQ179593 [4] #c367-507
TRGC6TRGC6*01F4q1.5-2.2EX1
RTPr
+
TRGC6AY644518 [1,2] °163678-164007
TRGC6TRGC6*01F4q1.5-2.2EX2A
RTPr
+
TRGC6AY644518 [1,2] °169836-169895
TRGC6TRGC6*01F4q1.5-2.2EX2B
RTPr
+
TRGC6AY644518 [1,2] °170403-170450
TRGC6TRGC6*01F4q1.5-2.2EX2C
RTPr
+
TRGC6AY644518 [1,2] °170735-170776
TRGC6TRGC6*01F4q1.5-2.2EX3
RTPr
+
TRGC6AY644518 [1,2] °174287-174426
TRGC6TRGC6*02F4q1.5-2.2EX1
RTPr
++
TRGC6DQ179594 [4] #c<1-330
TRGC6TRGC6*02F4q1.5-2.2EX2A
RTPr
++
TRGC6DQ179594 [4] #c331-390
TRGC6TRGC6*02F4q1.5-2.2EX2B
RTPr
++
TRGC6DQ179594 [4] #c391-438
TRGC6TRGC6*02F4q1.5-2.2EX2C
RTPr
++
TRGC6DQ179594 [4] #c439-480
TRGC6TRGC6*02F4q1.5-2.2EX3
RTPr
++
TRGC6DQ179594 [4] #c481->558
TRGC7TRGC7*01P (3)4q3.1EX1TRGC7AY644517 [3]75096-75423
TRGC7TRGC7*01P (3)4q3.1EX2ATRGC7AY644517 [3]79110-79173
TRGC7TRGC7*01P (3)4q3.1EX2CTRGC7AY644517 [3]79928-79975
TRGC7TRGC7*01P (3)4q3.1EX3TRGC7AY644517 [3]86348-86448
IMGT notes: ↑
  1. The sequence described in the manuscript is different from the one submitted to the EMBL data library.
  2. Nucleotide t at position 738 in EMBL flat file (codon 20 in EX3), nucleotide c in the manuscript (F20>L). Nucleotides gc (positions 804-805 in EMBL flat file (codon 42 in EX3), nucleotides tg in the manuscript (V42>C)
  3. because of stop codons in EX1
  4. The sequence described in the manuscript is different from the one submitted to the EMBL data library. Nucleotide t at position 738 in EMBL flat file (codon 20 in EX3) which may represent a submission error, nucleotide c in the manuscript (F20>L). Nucleotides gc (positions 804-805 in EMBL flat file (codon 42 in EX3) which may represent a submission error, nucleotides tg in the manuscript (V42>C)
  5. The sequence described in the manuscript is different from the one submitted to EMBL: DELETION of 1 nucleotide a (between positions 440-441) which may represent a submission error leading to a frameshift.
IMGT references: ↑
  1. Conrad M.L. et al., Analysis of the bovine T cell receptor gamma locus, Unpublished.
  2. Conrad M.L. et al., The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette, Vet. Immunol. Immunopathol, 2006, PUBMED: 17141331
  3. Conrad M.L. et al., The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette, Vet. Immunol. Immunopathol, vol. 115, no. 3-4, 2007, pp. 346-356. DOI: 10.1016/j.vetimm.2006.10.019
  4. Herzig C. et al., Bovine T cell receptor gamma variable and constant genes: combinatorial usage by circulating gammadelta T cells, Immunogenetics, vol. 58, no. 2-3, 2006, pp. 138-151. DOI: 10.1007/s00251-006-0097-2
  5. Ishiguro N. et al., Differentiation analysis of bovine T-lymphosarcoma, Vet. Immunol. Immunopathol, vol. 41, no. 1-2, 1994, pp. 1-17. DOI: 10.1016/0165-2427(94)90053-1
  6. Lahmers K.K. et al., The CD4+ T cell immunodominant Anaplasma marginale major surface protein 2 stimulates gammadelta T cell clones that express unique T cell receptors, J. Leukoc. Biol, vol. 77, no. 2, 2005, pp. 199-208. DOI: 10.1189/jlb.0804482
  7. Takeuchi N. et al., Molecular cloning and sequence analysis of bovine T-cell receptor gamma and delta chain genes, Immunogenetics, vol. 35, no. 2, 1992, pp. 89-96. DOI: 10.1007/BF00189517