Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of bovine (Bos taurus) TRGJ IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
TRGJ1-1 (8) TRGJ1-1*01 F 4q1.5-2.2
RTPr
++
 TRGC2 Holstein AY644518 [1,2] ° 102107-102166 * CH240-248F24 Holstein AC172685 [7] 23606-23665 *
TRGJ1-2 TRGJ1-2*01 F 4q1.5-2.2
RTPr
++
 TRGC2 Holstein AY644518 [1,2] ° 105094-105143 * CH240-248F24 Holstein AC172685 [7] 226335-226384 *
TRGJ1-2 TRGJ1-2*02 (F) (1) 4q1.5-2.2
RTPr
++
 BTGV18, TRGJ1S3 Holstein D16127 [4] #c 337->384 *
TRGJ1-2 TRGJ1-2*03 (F) (2) 4q1.5-2.2
RTPr
++
 BTG22, TRGJ1S3 Holstein D16129 [4] #c 339->381 *
TRGJ2-1 TRGJ2-1*01 F 4q1.5-2.2
RTPr
++
 CH240-248F24 Holstein AC172685 [7] 236573-236632 *
TRGJ2-1 TRGJ2-1*02 (F) (3) 4q1.5-2.2
RTPr
++
 BTGV8, TRGJ2S2 Holstein D16120 [4] #c 338->396 *
TRGJ2-1 TRGJ2-1*03 (F) (4) 4q1.5-2.2
RTPr
++
 BTGV4, TRGJ2S2 Holstein D16118 [4] #c 343->399 *
TRGJ2-2 TRGJ2-2*01 F 4q3.1
RTPr
++
 TRGC2 Holstein AY644518 [1,2] ° 138048-138097 * CH240-248F24 Holstein AC172685 [7] 26592-26641 *
TRGJ2-2 TRGJ2-2*02 (F) (5) 4q3.1
RTPr
++
 BTG10, TRGJ1S2 Holstein D16121 [4] #c 341->387 *
TRGJ2-2 TRGJ2-2*03 (F) (6) 4q3.1
RTPr
++
 BTGV19, TRGJ1S3 Holstein D16128 [4] #c 335->372 *
TRGJ3-1 TRGJ3-1*01 F 4q3.1
RTPr
++
 TCRG1 Holstein AY644517 [3] 124776-124835 *
TRGJ3-1 TRGJ3-1*02 (F) (7) 4q3.1
RTPr
++
 BTGV1, TRGJ2S1 Holstein D13648 [5] #c 348->405 *
TRGJ4-1 TRGJ4-1*01 F 4q3.1 TCRG1 Holstein AY644517 [3] 155562-155608 *
TRGJ4-2 TRGJ4-2*01 F 4q3.1
RTPr
++
 TCRG1 Holstein AY644517 [3] 158951-159000 *
TRGJ5-1 TRGJ5-1*01 F 4q3.1
RTPr
++
 TCRG5 Herford NW_937068 [6] complement(570-657)
TRGJ6-1 TRGJ6-1*01 F 4q1.5-2.2
RTPr
+
 CH240-248F24 Holstein AC172685 [7] 65112-65161 *
IMGT notes: ↑
  1. allele alias TRGJ1S3*01
  2. allele alias TRGJ1S3*04
  3. allele alias TRGJ2S2*02
  4. CONSERVED-TRP is replaced by Leucine L
  5. allele alias TRGJ1S2*03
  6. allele alias TRGJ1S3*03
  7. allele alias TRGJ2S1*01
  8. J-GENEs with a Tyrosine or a Tryptophane located four amino acids before the conserved Phe-Gly-X-Gly motif have been assigned to subgroups 1 and 2, respectively.
IMGT references: ↑
  1. Conrad M.L. et al., Analysis of the bovine T cell receptor gamma locus, Unpublished.
  2. Conrad M.L. et al., The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette, Vet. Immunol. Immunopathol, 2006, PUBMED: 17141331
  3. Conrad M.L. et al., The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette, Vet. Immunol. Immunopathol, vol. 115, no. 3-4, 2007, pp. 346-356. DOI: 10.1016/j.vetimm.2006.10.019
  4. Ishiguro N. et al., Molecular structure of bovine T cell receptor gamma and delta chains predominantly expressed on peripheral blood lymphocytes, Unpublished.
  5. Ishiguro N. et al., Unpublished.
  6. Lowe T.M. et al., tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence, Nucleic Acids Res, vol. 25, no. 5, 1997, pp. 955-964.
  7. Muzny D. et al., Direct Submission, Unpublished.