Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: A scoring system is employed to indicate the number of IMGT/LIGM-DB reference sequences and other sequences from the literature in which an IG or TR gene allele has been identified and annotated.

A single star ()
indicates that an IG or TR gene allele is annotated in the reference sequence only.
Two stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in one sequence from the literature.
Three stars ()
indicate that an IG or TR gene allele is annotated in its reference sequence and in at least two sequences from the literature.
In the Excel file, the stars are represented by the plus symbol (+).
Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of bovine (Bos taurus) TRGC IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesBreedAccession
numbers		Positions
in the sequence		Secondary
accession
numbers		Clone namesBreedAccession
numbers		Positions
in the sequence
TRGC1 TRGC1*01 F (1) 4q1.5-2.2 EX1 BTG2 Holstein D90409 [7] 159-488
TRGC1 TRGC1*01 F (1) 4q1.5-2.2 EX2A BTG2 Holstein D90409 [7] 489-593
TRGC1 TRGC1*01 F (1) 4q1.5-2.2 EX2B BTG2 Holstein D90409 [7] 594-641
TRGC1 TRGC1*01 F (1) 4q1.5-2.2 EX2C BTG2 Holstein D90409 [7] 642-680
TRGC1 TRGC1*01 F (2) 4q1.5-2.2 EX3 BTG2 Holstein D90409 [7] (4) 681-806
TRGC1 TRGC1*02 F 4q1.5-2.2 EX1 BTG9 Holstein D90410 [7] 133-462
TRGC1 TRGC1*02 F 4q1.5-2.2 EX2A BTG9 Holstein D90410 [7] 463-567
TRGC1 TRGC1*02 F 4q1.5-2.2 EX2B BTG9 Holstein D90410 [7] 568-615
TRGC1 TRGC1*02 F 4q1.5-2.2 EX2C BTG9 Holstein D90410 [7] 616-654
TRGC1 TRGC1*02 F 4q1.5-2.2 EX3 BTG9 Holstein D90410 [7] 655-780
TRGC1 TRGC1*03 F 4q1.5-2.2 EX1 BTG20 Holstein D90413 [7] 133-462 BTGT4 Holstein X63682 [5] 197-526
BTGC8 Holstein X63683 [5] 158-487
BTGT2 Holstein X63684 [5] 346-675
TRGC1 TRGC1*03 F 4q1.5-2.2 EX2A BTG20 Holstein D90413 [7] 463-567 BTGT4 Holstein X63682 [5] 527-631
BTGC8 Holstein X63683 [5] 488-592
BTGT2 Holstein X63684 [5] 676-780
TRGC1 TRGC1*03 F 4q1.5-2.2 EX2B BTG20 Holstein D90413 [7] 568-615 BTGT4 Holstein X63682 [5] 632-679
BTGC8 Holstein X63683 [5] 593-640
BTGT2 Holstein X63684 [5] 781-828
TRGC1 TRGC1*03 F 4q1.5-2.2 EX2C BTG20 Holstein D90413 [7] 616-654 BTGT4 Holstein X63682 [5] 680-718
BTGC8 Holstein X63683 [5] 641-679
BTGT2 Holstein X63684 [5] 829-867
TRGC1 TRGC1*03 F 4q1.5-2.2 EX3 BTG20 Holstein D90413 [7] 655-780 BTGT4 Holstein X63682 [5] 719-844
BTGC8 Holstein X63683 [5] 680-805
BTGT2 Holstein X63684 [5] 868-993
TRGC1 TRGC1*04 F 4q1.5-2.2 EX1
RTPr
+
 TRGC1 AY644518 [1,2] ° 108159-108488
TRGC1 TRGC1*04 F 4q1.5-2.2 EX2A
RTPr
+
 TRGC1 AY644518 [1,2] ° 110810-110914
TRGC1 TRGC1*04 F 4q1.5-2.2 EX2B
RTPr
+
 TRGC1 AY644518 [1,2] ° 111202-111249
TRGC1 TRGC1*04 F 4q1.5-2.2 EX2C
RTPr
+
 TRGC1 AY644518 [1,2] ° 113189-113227
TRGC1 TRGC1*04 F 4q1.5-2.2 EX3
RTPr
+
 TRGC1 AY644518 [1,2] ° 115342-115466
TRGC2 TRGC2*01 F 4q1.5-2.2 EX1 BTG15 Holstein D90411 [7] 158-487
TRGC2 TRGC2*01 F 4q1.5-2.2 EX2A BTG15 Holstein D90411 [7] 488-562
TRGC2 TRGC2*01 F 4q1.5-2.2 EX2B BTG15 Holstein D90411 [7] 563-607
TRGC2 TRGC2*01 F 4q1.5-2.2 EX2C BTG15 Holstein D90411 [7] 608-646
TRGC2 TRGC2*01 F 4q1.5-2.2 EX3 BTG15 Holstein D90411 [7] 647-790
TRGC2 TRGC2*02 F 4q1.5-2.2 EX1 BTG15 Holstein D90412 [7] (5) 158-486
TRGC2 TRGC2*02 F 4q1.5-2.2 EX2A BTG15 Holstein D90412 [7] (5) 487-561
TRGC2 TRGC2*02 F 4q1.5-2.2 EX2B BTG15 Holstein D90412 [7] (5) 562-606
TRGC2 TRGC2*02 F 4q1.5-2.2 EX2C BTG15 Holstein D90412 [7] (5) 607-639
TRGC2 TRGC2*02 F 4q1.5-2.2 EX3 BTG15 Holstein D90412 [7] (5) 640-780
TRGC2 TRGC2*03 F 4q1.5-2.2 EX1
RTPr
++
 BTG25 Holstein D90415 [7] 133-462 GTG32 Holstein D90417 [7] ° 158-487
TRGC2 TRGC2*03 F 4q1.5-2.2 EX2A
RTPr
++
 BTG25 Holstein D90415 [7] 463-537 GTG32 Holstein D90417 [7] ° 488-562
TRGC2 TRGC2*03 F 4q1.5-2.2 EX2B
RTPr
++
 BTG25 Holstein D90415 [7] 538-582 GTG32 Holstein D90417 [7] ° 563-607
TRGC2 TRGC2*03 F 4q1.5-2.2 EX2C
RTPr
++
 BTG25 Holstein D90415 [7] 583-621 GTG32 Holstein D90417 [7] ° 608-646
TRGC2 TRGC2*03 F 4q1.5-2.2 EX3
RTPr
++
 BTG25 Holstein D90415 [7] 622-765 GTG32 Holstein D90417 [7] ° 647-790
TRGC2 TRGC2*04 F 4q1.5-2.2 EX1 BTG27 Holstein D90416 [7] 141-470
TRGC2 TRGC2*04 F 4q1.5-2.2 EX2A BTG27 Holstein D90416 [7] 471-545
TRGC2 TRGC2*04 F 4q1.5-2.2 EX2B BTG27 Holstein D90416 [7] 546-590
TRGC2 TRGC2*04 F 4q1.5-2.2 EX2C BTG27 Holstein D90416 [7] 591-629
TRGC2 TRGC2*04 F 4q1.5-2.2 EX3 BTG27 Holstein D90416 [7] 630-773
TRGC2 TRGC2*05 F 4q1.5-2.2 EX1
RTPr
+
 TRGC2 AY644518 [1,2] ° 141448-141777
TRGC2 TRGC2*05 F 4q1.5-2.2 EX2A
RTPr
+
 TRGC2 AY644518 [1,2] ° 144541-144615
TRGC2 TRGC2*05 F 4q1.5-2.2 EX2B
RTPr
+
 TRGC2 AY644518 [1,2] ° 144893-144937
TRGC2 TRGC2*05 F 4q1.5-2.2 EX2C
RTPr
+
 TRGC2 AY644518 [1,2] ° 147598-147636
TRGC2 TRGC2*05 F 4q1.5-2.2 EX3
RTPr
+
 TRGC2 AY644518 [1,2] ° 149766-149908
TRGC3 TRGC3*01 F 4q3.1 EX1 BTG24 Holstein D90414 [7] 401-730
TRGC3 TRGC3*01 F 4q3.1 EX2A BTG24 Holstein D90414 [7] 731-787
TRGC3 TRGC3*01 F 4q3.1 EX2C BTG24 Holstein D90414 [7] 788-841
TRGC3 TRGC3*01 F 4q3.1 EX3 BTG24 Holstein D90414 [7] 842-982
TRGC3 TRGC3*02 F 4q3.1 EX1 TRGC3 AY644517 [3] 131190-131519
TRGC3 TRGC3*02 F 4q3.1 EX2A TRGC3 AY644517 [3] 133153-133209
TRGC3 TRGC3*02 F 4q3.1 EX2C TRGC3 AY644517 [3] 133999-134052
TRGC3 TRGC3*02 F 4q3.1 EX3 TRGC3 AY644517 [3] 135472-135611
TRGC4 TRGC4*01 F 4q3.1 EX1 BTGT1 Holstein X63680 [5] 146-475
TRGC4 TRGC4*01 F 4q3.1 EX2A BTGT1 Holstein X63680 [5] 476-535
TRGC4 TRGC4*01 F 4q3.1 EX2B BTGT1 Holstein X63680 [5] 536-583
TRGC4 TRGC4*01 F 4q3.1 EX2C BTGT1 Holstein X63680 [5] 584-634
TRGC4 TRGC4*01 F 4q3.1 EX3 BTGT1 Holstein X63680 [5] 635-775
TRGC4 TRGC4*02 F 4q3.1 EX1 TRGC4 AY644517 [3] 162894-163223
TRGC4 TRGC4*02 F 4q3.1 EX2A TRGC4 AY644517 [3] 167787-167846
TRGC4 TRGC4*02 F 4q3.1 EX2B TRGC4 AY644517 [3] 168159-168206
TRGC4 TRGC4*02 F 4q3.1 EX2C TRGC4 AY644517 [3] 168493-168543
TRGC4 TRGC4*02 F 4q3.1 EX3 TRGC4 AY644517 [3] 170876-171015
TRGC5 TRGC5*01 (F) 4q3.1 EX1
RTPr
++
 TRGC5 AY735449 [6] #c 418-747
TRGC5 TRGC5*01 (F) 4q3.1 EX2A
RTPr
++
 TRGC5 AY735449 [6] #c 748-783
TRGC5 TRGC5*01 (F) 4q3.1 EX3
RTPr
++
 TRGC5 AY735449 [6] #c 784-924
TRGC5 TRGC5*02 F 4q3.1 EX1 TRGC5 AY644517 [3] <1-215
TRGC5 TRGC5*02 F 4q3.1 EX2A TRGC5 AY644517 [3] 5617-5652
TRGC5 TRGC5*02 F 4q3.1 EX3 TRGC5 AY644517 [3] 7233-7372
TRGC5 TRGC5*03 F 4q3.1 EX1
RTPr
++
 TRGC5 DQ179593 [4] #c 1-330
TRGC5 TRGC5*03 F 4q3.1 EX2A
RTPr
++
 TRGC5 DQ179593 [4] #c 331-366
TRGC5 TRGC5*03 F 4q3.1 EX3
RTPr
++
 TRGC5 DQ179593 [4] #c 367-507
TRGC6 TRGC6*01 F 4q1.5-2.2 EX1
RTPr
+
 TRGC6 AY644518 [1,2] ° 163678-164007
TRGC6 TRGC6*01 F 4q1.5-2.2 EX2A
RTPr
+
 TRGC6 AY644518 [1,2] ° 169836-169895
TRGC6 TRGC6*01 F 4q1.5-2.2 EX2B
RTPr
+
 TRGC6 AY644518 [1,2] ° 170403-170450
TRGC6 TRGC6*01 F 4q1.5-2.2 EX2C
RTPr
+
 TRGC6 AY644518 [1,2] ° 170735-170776
TRGC6 TRGC6*01 F 4q1.5-2.2 EX3
RTPr
+
 TRGC6 AY644518 [1,2] ° 174287-174426
TRGC6 TRGC6*02 F 4q1.5-2.2 EX1
RTPr
++
 TRGC6 DQ179594 [4] #c <1-330
TRGC6 TRGC6*02 F 4q1.5-2.2 EX2A
RTPr
++
 TRGC6 DQ179594 [4] #c 331-390
TRGC6 TRGC6*02 F 4q1.5-2.2 EX2B
RTPr
++
 TRGC6 DQ179594 [4] #c 391-438
TRGC6 TRGC6*02 F 4q1.5-2.2 EX2C
RTPr
++
 TRGC6 DQ179594 [4] #c 439-480
TRGC6 TRGC6*02 F 4q1.5-2.2 EX3
RTPr
++
 TRGC6 DQ179594 [4] #c 481->558
TRGC7 TRGC7*01 P (3) 4q3.1 EX1 TRGC7 AY644517 [3] 75096-75423
TRGC7 TRGC7*01 P (3) 4q3.1 EX2A TRGC7 AY644517 [3] 79110-79173
TRGC7 TRGC7*01 P (3) 4q3.1 EX2C TRGC7 AY644517 [3] 79928-79975
TRGC7 TRGC7*01 P (3) 4q3.1 EX3 TRGC7 AY644517 [3] 86348-86448
IMGT notes: ↑
  1. The sequence described in the manuscript is different from the one submitted to the EMBL data library.
  2. Nucleotide t at position 738 in EMBL flat file (codon 20 in EX3), nucleotide c in the manuscript (F20>L). Nucleotides gc (positions 804-805 in EMBL flat file (codon 42 in EX3), nucleotides tg in the manuscript (V42>C)
  3. because of stop codons in EX1
  4. The sequence described in the manuscript is different from the one submitted to the EMBL data library. Nucleotide t at position 738 in EMBL flat file (codon 20 in EX3) which may represent a submission error, nucleotide c in the manuscript (F20>L). Nucleotides gc (positions 804-805 in EMBL flat file (codon 42 in EX3) which may represent a submission error, nucleotides tg in the manuscript (V42>C)
  5. The sequence described in the manuscript is different from the one submitted to EMBL: DELETION of 1 nucleotide a (between positions 440-441) which may represent a submission error leading to a frameshift.
IMGT references: ↑
  1. Conrad M.L. et al., Analysis of the bovine T cell receptor gamma locus, Unpublished.
  2. Conrad M.L. et al., The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette, Vet. Immunol. Immunopathol, 2006, PUBMED: 17141331
  3. Conrad M.L. et al., The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette, Vet. Immunol. Immunopathol, vol. 115, no. 3-4, 2007, pp. 346-356. DOI: 10.1016/j.vetimm.2006.10.019
  4. Herzig C. et al., Bovine T cell receptor gamma variable and constant genes: combinatorial usage by circulating gammadelta T cells, Immunogenetics, vol. 58, no. 2-3, 2006, pp. 138-151. DOI: 10.1007/s00251-006-0097-2
  5. Ishiguro N. et al., Differentiation analysis of bovine T-lymphosarcoma, Vet. Immunol. Immunopathol, vol. 41, no. 1-2, 1994, pp. 1-17. DOI: 10.1016/0165-2427(94)90053-1
  6. Lahmers K.K. et al., The CD4+ T cell immunodominant Anaplasma marginale major surface protein 2 stimulates gammadelta T cell clones that express unique T cell receptors, J. Leukoc. Biol, vol. 77, no. 2, 2005, pp. 199-208. DOI: 10.1189/jlb.0804482
  7. Takeuchi N. et al., Molecular cloning and sequence analysis of bovine T-cell receptor gamma and delta chain genes, Immunogenetics, vol. 35, no. 2, 1992, pp. 89-96. DOI: 10.1007/BF00189517