Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

In the realm of IMGT allele confirmation, a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Domestic ferret (Mustela putorius furo) IGLV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation
Chromosomosal
localization
R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
Secondary
accession
numbers
IsolateClone namesAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGLV1IGLV1-73 IGLV1-73*01 ORF (1) JIRA1106 IMGT000131 301988-302503
IGLV1IGLV1-75 IGLV1-75*01 (2) JIRA1106 IMGT000131 236862-237412
IGLV1IGLV1-79 IGLV1-79*01 F JIRA1106 IMGT000131 150107-150627
IGLV1IGLV1-82 IGLV1-82*01 (3) JIRA1106 IMGT000131 44818-45315
IGLV1IGLV1-88 IGLV1-88*01 F JIRA1106 IMGT000168 948383-948900
IGLV1IGLV1-99 IGLV1-99*01 (4) JIRA1106 IMGT000168 613237-613533 *
IGLV1IGLV1-102 IGLV1-102*01 (5) JIRA1106 IMGT000168 590525-591029
IGLV1IGLV1-103 IGLV1-103*01 (6) JIRA1106 IMGT000168 579773-580245
IGLV1IGLV1-112 IGLV1-112*01 F JIRA1106 IMGT000168 501446-501958
IGLV1IGLV1-116 IGLV1-116*01 F JIRA1106 IMGT000168 434236-434739
IGLV1IGLV1-120 IGLV1-120*01 (7) JIRA1106 IMGT000168 326271-326759
IGLV1IGLV1-123 IGLV1-123*01 (8) JIRA1106 IMGT000168 314515-314797 *
IGLV1IGLV1-125 IGLV1-125*01 (9) JIRA1106 IMGT000168 303519-304017
IGLV1IGLV1-129 IGLV1-129*01 (10) JIRA1106 IMGT000168 276406-276943
IGLV2IGLV2-66 IGLV2-66*01 (11) JIRA1106 IMGT000131 499657-500160
IGLV3IGLV3-1 IGLV3-1*01 F JIRA1106 IMGT000131 1388295-1388995
IGLV3IGLV3-2 IGLV3-2*01 (12) JIRA1106 IMGT000131 1384255-1384790
IGLV3IGLV3-3 IGLV3-3*01 (13) JIRA1106 IMGT000131 1379220-1379973
IGLV3IGLV3-4 IGLV3-4*01 (14) JIRA1106 IMGT000131 1356599-1357122
IGLV3IGLV3-6 IGLV3-6*01 ORF (15) JIRA1106 IMGT000131 1325663-1326200
IGLV3IGLV3-7 IGLV3-7*01 (16) JIRA1106 IMGT000131 1317912-1318195 *
IGLV3IGLV3-8 IGLV3-8*01 F JIRA1106 IMGT000131 1309938-1310704
IGLV3IGLV3-9 IGLV3-9*01 (17) JIRA1106 IMGT000131 1304870-1305150 *
IGLV3IGLV3-10 IGLV3-10*01 (18) JIRA1106 IMGT000131 1292844-1293382
IGLV3IGLV3-11 IGLV3-11*01 ORF (19) JIRA1106 IMGT000131 1286796-1287561
IGLV3IGLV3-12 IGLV3-12*01 (20) JIRA1106 IMGT000131 1280827-1281105 *
IGLV3IGLV3-13 IGLV3-13*01 ORF (21) JIRA1106 IMGT000131 1276483-1277020
IGLV3IGLV3-14 IGLV3-14*01 ORF (22) JIRA1106 IMGT000131 1266953-1267719
IGLV3IGLV3-15 IGLV3-15*01 (23) JIRA1106 IMGT000131 1261906-1262186 *
IGLV3IGLV3-16 IGLV3-16*01 (24) JIRA1106 IMGT000131 1253677-1254215
IGLV3IGLV3-17 IGLV3-17*01 F JIRA1106 IMGT000131 complement(1241513-1242045)
IGLV3IGLV3-17D IGLV3-17D*01 F JIRA1106 IMGT000131 1126514-1127046
IGLV3IGLV3-18 IGLV3-18*01 F JIRA1106 IMGT000131 complement(1235265-1236032)
IGLV3IGLV3-18D IGLV3-18D*01 F JIRA1106 IMGT000131 1132524-1133291
IGLV3IGLV3-20 IGLV3-20*01 F JIRA1106 IMGT000131 complement(1205426-1205964)
IGLV3IGLV3-20D IGLV3-20D*01 F JIRA1106 IMGT000131 1162410-1162948
IGLV3IGLV3-21 IGLV3-21*01 (16) JIRA1106 IMGT000131 1194869-1195151 *
IGLV3IGLV3-22 IGLV3-22*01 F JIRA1106 IMGT000131 1185684-1186451
IGLV3IGLV3-27 IGLV3-27*01 (25) JIRA1106 IMGT000131 1062912-1063444
IGLV3IGLV3-28 IGLV3-28*01 (26) JIRA1106 IMGT000131 1052482-1053082
IGLV3IGLV3-29 IGLV3-29*01 F JIRA1106 IMGT000131 1046236-1046989
IGLV3IGLV3-30 IGLV3-30*01 (27) JIRA1106 IMGT000131 <1041150-1041434 *
IGLV3IGLV3-31 IGLV3-31*01 (28) JIRA1106 IMGT000131 1036721-1037267
IGLV3IGLV3-32 IGLV3-32*01 (16) JIRA1106 IMGT000131 1028908-1029195 *
IGLV3IGLV3-33 IGLV3-33*01 F JIRA1106 IMGT000131 1024324-1025056
IGLV3IGLV3-34 IGLV3-34*01 (29) JIRA1106 IMGT000131 1019033-1019313 *
IGLV3IGLV3-35 IGLV3-35*01 (30) JIRA1106 IMGT000131 973680-974429
IGLV3IGLV3-36 IGLV3-36*01 F JIRA1106 IMGT000131 963614-964150
IGLV3IGLV3-37 IGLV3-37*01 (31) JIRA1106 IMGT000131 949594-950336
IGLV3IGLV3-38 IGLV3-38*01 F JIRA1106 IMGT000131 945614-946150
IGLV3IGLV3-39 IGLV3-39*01 F JIRA1106 IMGT000131 938702-939242
IGLV3IGLV3-41 IGLV3-41*01 F JIRA1106 IMGT000131 907731-908492
IGLV3IGLV3-42 IGLV3-42*01 (16) JIRA1106 IMGT000131 901183-901466 *
IGLV3IGLV3-43 IGLV3-43*01 (32) JIRA1106 IMGT000131 865149-865445 *
IGLV3IGLV3-45 IGLV3-45*01 F JIRA1106 IMGT000131 835571-836321
IGLV3IGLV3-46 IGLV3-46*01 F JIRA1106 IMGT000131 822894-823430
IGLV3IGLV3-47 IGLV3-47*01 F JIRA1106 IMGT000131 814602-815104
IGLV3IGLV3-49 IGLV3-49*01 F JIRA1106 IMGT000131 770856-771559
IGLV3IGLV3-50 IGLV3-50*01 F JIRA1106 IMGT000131 764700-765456
IGLV3IGLV3-51 IGLV3-51*01 (27) JIRA1106 IMGT000131 <756956-757240 *
IGLV3IGLV3-52 IGLV3-52*01 (16) JIRA1106 IMGT000131 752474-752748 *
IGLV3IGLV3-53 IGLV3-53*01 (33) JIRA1106 IMGT000131 737816-738332
IGLV3IGLV3-56 IGLV3-56*01 F JIRA1106 IMGT000131 652892-653642
IGLV3IGLV3-57 IGLV3-57*01 F JIRA1106 IMGT000131 646196-646736
IGLV3IGLV3-58 IGLV3-58*01 (34) JIRA1106 IMGT000131 639599-640462
IGLV3IGLV3-59 IGLV3-59*01 (35) JIRA1106 IMGT000131 632678-633479
IGLV3IGLV3-60 IGLV3-60*01 F JIRA1106 IMGT000131 626130-626664
IGLV3IGLV3-61 IGLV3-61*01 (36) JIRA1106 IMGT000131 622106-622640
IGLV3IGLV3-64 IGLV3-64*01 (37) JIRA1106 IMGT000131 583450-583959
IGLV4IGLV4-5 IGLV4-5*01 (38) JIRA1106 IMGT000131 1341961-1342471
IGLV4IGLV4-19 IGLV4-19*01 (39) JIRA1106 IMGT000131 complement(1210318-1210850)
IGLV4IGLV4-19D IGLV4-19D*01 (39) JIRA1106 IMGT000131 1157527-1158059
IGLV4IGLV4-23 IGLV4-23*01 (38) JIRA1106 IMGT000131 1178137-1178648
IGLV4IGLV4-26 IGLV4-26*01 ORF (40) JIRA1106 IMGT000131 1083238-1083749
IGLV4IGLV4-54 IGLV4-54*01 ORF (41) JIRA1106 IMGT000131 733173-733684
IGLV4IGLV4-62 IGLV4-62*01 ORF (42) JIRA1106 IMGT000131 617164-617673
IGLV4IGLV4-63 IGLV4-63*01 (43) JIRA1106 IMGT000131 593573-593885 *
IGLV5IGLV5-70 IGLV5-70*01 (44) JIRA1106 IMGT000131 358903-359426
IGLV5IGLV5-71 IGLV5-71*01 F JIRA1106 IMGT000131 354631-355159
IGLV5IGLV5-72 IGLV5-72*01 (45) JIRA1106 IMGT000131 310836-311353
IGLV5IGLV5-74 IGLV5-74*01 (46) JIRA1106 IMGT000131 296351-296872
IGLV5IGLV5-76 IGLV5-76*01 (47) JIRA1106 IMGT000131 233381-233917
IGLV5IGLV5-80 IGLV5-80*01 (48) JIRA1106 IMGT000131 141692-142226
IGLV5IGLV5-81 IGLV5-81*01 F JIRA1106 IMGT000131 133231-133758
IGLV5IGLV5-83 IGLV5-83*01 (20) JIRA1106 IMGT000131 33713-34031 *
IGLV5IGLV5-86 IGLV5-86*01 (49) JIRA1106 IMGT000168 964132->964440 *
IGLV5IGLV5-89 IGLV5-89*01 (50) JIRA1106 IMGT000168 906471-907001
IGLV5IGLV5-91 IGLV5-91*01 (51) JIRA1106 IMGT000168 727496-727801 *
IGLV5IGLV5-92 IGLV5-92*01 (52) JIRA1106 IMGT000168 724718-725029 *
IGLV5IGLV5-95 IGLV5-95*01 (53) JIRA1106 IMGT000168 681045-681697
IGLV5IGLV5-98 IGLV5-98*01 F JIRA1106 IMGT000168 624897-625437
IGLV5IGLV5-100 IGLV5-100*01 (54) JIRA1106 IMGT000168 609403-609892
IGLV5IGLV5-101 IGLV5-101*01 (55) JIRA1106 IMGT000168 595347-595882
IGLV5IGLV5-104 IGLV5-104*01 (56) JIRA1106 IMGT000168 575569-576100
IGLV5IGLV5-106 IGLV5-106*01 (57) JIRA1106 IMGT000168 564204-564508 *
IGLV5IGLV5-107 IGLV5-107*01 (58) JIRA1106 IMGT000168 556223-556759
IGLV5IGLV5-109 IGLV5-109*01 F JIRA1106 IMGT000168 543125-543691
IGLV5IGLV5-114 IGLV5-114*01 (59) JIRA1106 IMGT000168 470056-470592
IGLV5IGLV5-121 IGLV5-121*01 (60) JIRA1106 IMGT000168 319210-319732
IGLV5IGLV5-124 IGLV5-124*01 (61) JIRA1106 IMGT000168 310859-311394
IGLV5IGLV5-126 IGLV5-126*01 (62) JIRA1106 IMGT000168 299349-299873
IGLV5IGLV5-127 IGLV5-127*01 (11) JIRA1106 IMGT000168 292581-293100
IGLV5IGLV5-130 IGLV5-130*01 F JIRA1106 IMGT000168 271110-271667
IGLV7IGLV7-69 IGLV7-69*01 F JIRA1106 IMGT000131 383361-383838
IGLV7IGLV7-78 IGLV7-78*01 (63) JIRA1106 IMGT000131 <219525-219817 *
IGLV7IGLV7-85 IGLV7-85*01 (64) JIRA1106 IMGT000131 17006-17297 *
IGLV7IGLV7-110 IGLV7-110*01 (65) JIRA1106 IMGT000168 519694-520336
IGLV7IGLV7-118 IGLV7-118*01 (66) JIRA1106 IMGT000168 419664->419955 *
IGLV8IGLV8-77 IGLV8-77*01 F JIRA1106 IMGT000131 224163-224655
IGLV8IGLV8-84 IGLV8-84*01 (67) JIRA1106 IMGT000131 29088-29580
IGLV8IGLV8-90 IGLV8-90*01 (68) JIRA1106 IMGT000168 902082-902600
IGLV8IGLV8-108 IGLV8-108*01 (69) JIRA1106 IMGT000168 551188-551683
IGLV8IGLV8-111 IGLV8-111*01 (16) JIRA1106 IMGT000168 511622-511909 *
IGLV8IGLV8-119 IGLV8-119*01 (70) JIRA1106 IMGT000168 406785-407074 *
IGLV8IGLV8-128 IGLV8-128*01 (71) JIRA1106 IMGT000168 282533-282820 *
IMGT notes:
  1. insertions in CDR1-IMGT: 5 AA are added
  2. frameshift in L-PART2: deletion of 1 nt, several STOP-CODON in V-REGION, frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  3. frameshift in L-PART2: deletion of 1 nt, frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  4. no L-PART1, no L-PART2, frameshift in V-REGION: insertion of 1 nt in FR2-IMGT
  5. frameshift in L-PART2: deletion of 1 nt, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  6. STOP-CODON in L-PART1, STOP-CODON in V-REGION: position 17, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT, no V-NONAMER
  7. no INIT-CODON: Leu instead of Met, STOP-CODON in L-PART1, STOP-CODON in L-PART2, frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  8. no L-PART1, no L-PART2, several STOP-CODON in V-REGION, frameshift in V-REGION: deletion of 13 nt in FR3-IMGT
  9. STOP-CODON in L-PART1, frameshifts in V-REGION: several insertions and deletions, no V-HEPTAMER
  10. frameshift in V-REGION: insertion of 5 nt in FR2-IMGT
  11. STOP-CODON in L-PART1, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  12. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  13. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  14. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, STOP-CODON in V-REGION: position 75
  15. noncanonical V-NONAMER: accccaact instead of acaaaaacc
  16. no L-PART1, frameshifts in V-REGION: several insertions and deletions
  17. no L-PART1, no L-PART2, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  18. STOP-CODON in V-REGION: position 69
  19. no 1st-CYS: Tyr instead of Cys, no CONSERVED-TRP: Cys instead of Trp, no 2nd-CYS: Ser instead of Cys
  20. no L-PART1, no L-PART2, frameshifts in V-REGION: several insertions and deletions
  21. noncanonical DONOR-SPLICE: ngc instead of ngt
  22. noncanonical V-HEPTAMER: cacgctg instead of cacagtg
  23. no L-PART1, no L-PART2, STOP-CODON in V-REGION: position 7, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  24. STOP-CODON in V-REGION: position 95
  25. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
  26. STOP-CODON in L-PART1, no L-PART2, no V-NONAMER
  27. no L-PART1, no L-PART2, truncated pseudogene
  28. several STOP-CODON in V-REGION
  29. STOP-CODON in L-PART2, no L-PART1, frameshifts in V-REGION: several insertions and deletions
  30. STOP-CODON in V-REGION: position 75
  31. frameshift in L-PART1: deletion of 8 nt causing defectuous DONOR-SPLICE, STOP-CODON in V-REGION: position 75
  32. no L-PART1, no L-PART2, frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  33. no INIT-CODON: Thr instead of Met, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  34. no INIT-CODON: Thr instead of Met, STOP-CODON in L-PART1, frameshifts in V-REGION: several insertions and deletions
  35. frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  36. no INIT-CODON: Arg instead of Met, frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
  37. no L-PART2, no 1st-CYS: STOP-CODON instead of Cys, no CONSERVED-TRP: STOP-CODON instead of Trp, several STOP-CODON in V-REGION, frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
  38. STOP-CODON at position 116 (last 3' codon of germline V-REGION) may disappear during rearrangements
  39. no INIT-CODON: Thr instead of Met, frameshifts in V-REGION: insertion of 22 nt and deletion of 1 nt in FR2-IMGT
  40. STOP-CODON at position 116 (last 3' codon of germline V-REGION) may disappear during rearrangements, noncanonical V-NONAMER: gataaaacc instead of acaaaaacc
  41. STOP-CODON at position 116 (last 3' codon of germline V-REGION) may disappear during rearrangements, noncanonical V-NONAMER:gcctaaacc instead of acaaaaacc
  42. noncanonical DONOR-SPLICE: nga instead of ngt, STOP-CODON at position 116 (last 3' codon of germline V-REGION) may disappear during rearrangements, noncanonical V-NONAMER: gttaaaacc instead of acaaaaacc
  43. no CONSERVED-TRP: STOP-CODON instead of Trp, several STOP-CODON in V-REGION, no 2nd-CYS: STOP-CODON instead of Cys, no V-RS
  44. frameshift in L-PART1: deletion of 2 nt causing defectuous DONOR-SPLICE, STOP-CODON in V-REGION: position 95
  45. frameshift in V-REGION: insertion of 1 nt in CDR2-IMGT
  46. no INIT-CODON: Trp instead of Met, no DONOR-SPLICE, STOP-CODON in V-REGION: position 6, frameshift in V-REGION: deletion of 5 nt in FR1-IMGT
  47. no INIT-CODON: Val instead of Met, no DONOR-SPLICE, STOP-CODON in V-REGION: position 75
  48. frameshift in L-PART1: insertion of 1 nt causing defectuous DONOR-SPLICE, several STOP-CODON in V-REGION, frameshifts in V-REGION: deletion of 8 nt and deletion of 1 nt in FR3-IMGT
  49. STOP-CODON in L-PART1, truncated pseudogene, no V-RS
  50. no INIT-CODON: Ile instead of Met, STOP-CODON in V-REGION: position 1, frameshift in V-REGION: deletion of 2 nt in FR1-IMGT
  51. no V-RS
  52. no L-PART1, no L-PART2, no 2nd-CYS: STOP-CODON instead of Cys, no V-RS
  53. STOP-CODON in L-PART1, frameshifts in V-REGION: several insertions and deletions
  54. STOP-CODON in L-PART1, no DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  55. STOP-CODON in V-REGION: position 97
  56. frameshift in V-REGION: deletion of 2 nt in FR1-IMGT
  57. no L-PART1, frameshift in V-REGION: deletion of 7 nt in CDR1-IMGT
  58. frameshifts in V-REGION: several insertions and deletions
  59. frameshift in L-PART1: deletion of 2 nt causing defectuous DONOR-SPLICE, STOP-CODON in V-REGION: position 47
  60. frameshift in L-PART1: deletion of 5 nt causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  61. STOP-CODON in V-REGION: position 51
  62. frameshift in V-REGION: insertion of 2 nt in FR3-IMGT
  63. no L-PART1, no 2nd-CYS: STOP-CODON instead of Cys
  64. frameshift in L-PART2: deletion of 1 nt, no L-PART1, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT, no V-RS
  65. frameshift in L-PART1: insertion of 2 nt causing defectuous DONOR-SPLICE, frameshift in L-PART2, STOP-CODON in V-REGION: position 55, frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  66. frameshift in L-PART1: insertion of 2 nt causing defectuous DONOR-SPLICE, frameshift in L-PART1: deletion of 1 nt causing defectuous DONOR-SPLICE
  67. noncanonical V-NONAMER: accagaatc instead of acaaaaacc
  68. STOP-CODON in V-REGION: position 38
  69. STOP-CODON in L-PART1, frameshift in L-PART2: deletion of 1 nt, no CONSERVED-TRP: STOP-CODON instead of Trp
  70. no L-PART1, several STOP-CODON in V-REGION, no CONSERVED-TRP: STOP-CODON instead of Trp
  71. frameshift in V-REGION: deletion of 7 nt in FR3-IMGT, no V-RS