Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of sumatran orangutan (Pongo abelii) IGHC IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation
FctChromosomosal
localization
ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers
Positions
in the sequence
Secondary
accession
numbers
Clone namesIsolateAccession
numbers
Positions
in the sequence
IGHA1 IGHA1*01 F CH1 Susie IMGT000122 [1] MAP 1420348-1420653
IGHA1 IGHA1*01 F H-CH2 Susie IMGT000122 [1] MAP 1420864-1421217
IGHA1 IGHA1*01 F CH3-CHS Susie IMGT000122 [1] MAP 1421441-1421832
IGHA1 IGHA1*01 F M Susie IMGT000122 [1] MAP 1424437-1424648
IGHA2 IGHA2*01 F CH1 Susie IMGT000122 [1] MAP 1547131-1547436
IGHA2 IGHA2*01 F H-CH2 Susie IMGT000122 [1] MAP 1547647-1547967
IGHA2 IGHA2*01 F CH3-CHS Susie IMGT000122 [1] MAP 1548190-1548581
IGHA2 IGHA2*01 F M Susie IMGT000122 [1] MAP 1551117-1551328
IGHD IGHD*01 (1) CH1 Susie IMGT000122 [1] MAP 1178577-1178888
IGHD IGHD*01 (1) H1 Susie IMGT000122 [1] MAP 1179353-1179454
IGHD IGHD*01 (1) H2 Susie IMGT000122 [1] MAP 1182429-1182497
IGHD IGHD*01 (1) CH2 Susie IMGT000122 [1] MAP 1183232-1183555
IGHD IGHD*01 (1) CH3 Susie IMGT000122 [1] MAP 1183766-1184089
IGHD IGHD*01 (1) CHS Susie IMGT000122 [1] MAP 1186031-1186056
IGHD IGHD*01 (1) M1 Susie IMGT000122 [1] MAP 1186860-1187017
IGHD IGHD*01 (1) M2 Susie IMGT000122 [1] MAP 1187302-1187307
IGHE1 IGHE1*01 F CH1 Susie IMGT000122 [1] MAP 1407457-1407765
IGHE1 IGHE1*01 F CH2 Susie IMGT000122 [1] MAP 1407971-1408291
IGHE1 IGHE1*01 F CH3 Susie IMGT000122 [1] MAP 1408378-1408701
IGHE1 IGHE1*01 F CH4-CHS Susie IMGT000122 [1] MAP 1408781-1409109
IGHE1 IGHE1*01 F M1 Susie IMGT000122 [1] MAP 1411188-1411309
IGHE1 IGHE1*01 F M2 Susie IMGT000122 [1] MAP 1411394-1411474
IGHE2 IGHE2*01 (2) CH1 Susie IMGT000122 [1] MAP 1533744-1534052
IGHE2 IGHE2*01 (3) CH2 Susie IMGT000122 [1] MAP 1534256-1534575
IGHE2 IGHE2*01 (4) CH3 Susie IMGT000122 [1] MAP 1534662-1534981
IGHE2 IGHE2*01 (5) CH4 Susie IMGT000122 [1] 1535061-1535382
IGHE2 IGHE2*01 (2) CH4-CHS Susie IMGT000122 [1] MAP 1535061-1535388
IGHE2 IGHE2*01 (6) CHS Susie IMGT000122 [1] 1535383-1535388
IGHE2 IGHE2*01 (2) M1 Susie IMGT000122 [1] MAP 1537445-1537565
IGHE2 IGHE2*01 (2) M2 Susie IMGT000122 [1] MAP 1537650-1537730
IGHEP IGHEP*01 (1) CH1 Susie IMGT000122 [1] MAP 1334459-1334766
IGHEP IGHEP*01 (3) CH2 Susie IMGT000122 [1] MAP 1334972-1335288
IGHEP IGHEP*01 (4) CH3 Susie IMGT000122 [1] MAP 1335373-1335693
IGHEP IGHEP*01 (5) CH4 Susie IMGT000122 [1] 1335771-1336088
IGHEP IGHEP*01 (7) CH4-CHS Susie IMGT000122 [1] MAP 1335771-1336094
IGHEP IGHEP*01 (8) CHS Susie IMGT000122 [1] 1336089-1336094
IGHEP IGHEP*01 (7) M1 Susie IMGT000122 [1] MAP 1338166-1338287
IGHEP IGHEP*01 (7) M2 Susie IMGT000122 [1] MAP 1338371-1338451
IGHG1 IGHG1*01 F CH1 Susie IMGT000122 [1] MAP 1385203-1385496
IGHG1 IGHG1*01 F H Susie IMGT000122 [1] MAP 1385889-1385933
IGHG1 IGHG1*01 F CH2 Susie IMGT000122 [1] MAP 1386052-1386381
IGHG1 IGHG1*01 F CH3-CHS Susie IMGT000122 [1] MAP 1386479-1386798
IGHG1 IGHG1*01 F M1 Susie IMGT000122 [1] MAP 1388090-1388220
IGHG1 IGHG1*01 F M2 Susie IMGT000122 [1] MAP 1389577-1389657
IGHG3A IGHG3A*01 F CH1 Susie IMGT000122 [1] MAP 1255833-1256126
IGHG3A IGHG3A*01 F H1 Susie IMGT000122 [1] MAP 1256519-1256569
IGHG3A IGHG3A*01 F H2 Susie IMGT000122 [1] MAP 1256713-1256757
IGHG3A IGHG3A*01 F CH2 Susie IMGT000122 [1] MAP 1256876-1257205
IGHG3A IGHG3A*01 F CH3-CHS Susie IMGT000122 [1] MAP 1257303-1257622
IGHG3A IGHG3A*01 F M1 Susie IMGT000122 [1] MAP 1258916-1259046
IGHG3A IGHG3A*01 F M2 Susie IMGT000122 [1] MAP 1261852-1261932
IGHG3B IGHG3B*01 ORF (9) CH1 Susie IMGT000122 [1] MAP 1283152-1283445
IGHG3B IGHG3B*01 ORF (9) H1 Susie IMGT000122 [1] MAP 1283838-1283888
IGHG3B IGHG3B*01 ORF (9) H2 Susie IMGT000122 [1] MAP 1284032-1284076
IGHG3B IGHG3B*01 ORF (9) H3 Susie IMGT000122 [1] MAP 1284226-1284270
IGHG3B IGHG3B*01 ORF (9) H4 Susie IMGT000122 [1] MAP 1284421-1284465
IGHG3B IGHG3B*01 ORF (9) CH2 Susie IMGT000122 [1] MAP 1284584-1284913
IGHG3B IGHG3B*01 ORF (9) CH3-CHS Susie IMGT000122 [1] MAP 1285011-1285330
IGHG3B IGHG3B*01 ORF (9) M1 Susie IMGT000122 [1] MAP 1286604-1286734
IGHG3B IGHG3B*01 ORF (9) M2 Susie IMGT000122 [1] MAP 1288836-1288916
IGHG3C IGHG3C*01 (1) CH1 Susie IMGT000122 [1] MAP 1355577-1355868
IGHG3C IGHG3C*01 (10) H1 Susie IMGT000122 [1] MAP 1356257-1356306
IGHG3C IGHG3C*01 (10) H2 Susie IMGT000122 [1] MAP 1356446-1356480
IGHG3C IGHG3C*01 (10) H3 Susie IMGT000122 [1] MAP 1356635-1356679
IGHG3C IGHG3C*01 (10) H4 Susie IMGT000122 [1] MAP 1356825-1356868
IGHG3C IGHG3C*01 (3) CH2 Susie IMGT000122 [1] MAP 1356984-1357310
IGHG3C IGHG3C*01 (4) CH3 Susie IMGT000122 [1] 1357408-1357720
IGHG3C IGHG3C*01 (10) CH3-CHS Susie IMGT000122 [1] MAP 1357408-1357726
IGHG3C IGHG3C*01 (11) CHS Susie IMGT000122 [1] 1357721-1357726
IGHG3C IGHG3C*01 (10) M1 Susie IMGT000122 [1] MAP 1358997-1359127
IGHG3C IGHG3C*01 (10) M2 Susie IMGT000122 [1] MAP 1361392-1361472
IGHG4 IGHG4*01 F CH1 Susie IMGT000122 [1] MAP 1506437-1506730
IGHG4 IGHG4*01 F H Susie IMGT000122 [1] MAP 1507123-1507167
IGHG4 IGHG4*01 F CH2 Susie IMGT000122 [1] MAP 1507286-1507615
IGHG4 IGHG4*01 F CH3-CHS Susie IMGT000122 [1] MAP 1507713-1508032
IGHG4 IGHG4*01 F M1 Susie IMGT000122 [1] MAP 1509326-1509456
IGHG4 IGHG4*01 F M2 Susie IMGT000122 [1] MAP 1510350-1510430
IGHGP1 IGHGP1*01 (1) CH1 Susie IMGT000122 [1] MAP 1312539-1312826
IGHGP1 IGHGP1*01 (10) H Susie IMGT000122 [1] MAP 1313216-1313267
IGHGP1 IGHGP1*01 (3) CH2 Susie IMGT000122 [1] MAP 1313386-1313716
IGHGP1 IGHGP1*01 (4) CH3 Susie IMGT000122 [1] 1313814-1314126
IGHGP1 IGHGP1*01 (10) CH3-CHS Susie IMGT000122 [1] MAP 1313814-1314132
IGHGP1 IGHGP1*01 (12) CHS Susie IMGT000122 [1] 1314127-1314132
IGHGP1 IGHGP1*01 (10) M1 Susie IMGT000122 [1] MAP 1315397-1315527
IGHGP1 IGHGP1*01 (10) M2 Susie IMGT000122 [1] MAP 1316895-1316975
IGHM IGHM*01 F CH1 Susie IMGT000122 [1] MAP 1168426-1168737
IGHM IGHM*01 F CH2 Susie IMGT000122 [1] MAP 1168828-1169163
IGHM IGHM*01 F CH3 Susie IMGT000122 [1] MAP 1169409-1169726
IGHM IGHM*01 F CH4-CHS Susie IMGT000122 [1] MAP 1169906-1170297
IGHM IGHM*01 F M1 Susie IMGT000122 [1] MAP 1172371-1172486
IGHM IGHM*01 F M2 Susie IMGT000122 [1] MAP 1172660-1172665
IMGT notes:
  1. frameshift in CH1
  2. frameshift in CH2, CH3 and CH4
  3. frameshift in CH2
  4. frameshift in CH3
  5. frameshift in CH4
  6. for complete translation nucleotide g at position 1535383 should be included in CHS
  7. frameshift in CH1, CH2, CH3 and CH4
  8. for complete translation nucleotide g at position 1336089 should be included in CHS
  9. noncanonical DONOR-SPLICE: ngg instead of ngt
  10. frameshift in CH1, CH2 and CH3
  11. for complete translation nucleotide g at position 1357721 should be included in CHS
  12. for complete translation nucleotide g at position 1314127 should be included in CHS
IMGT references:
  1. Pollen,A. et al., High-resolution comparative analysis of great ape genomes, Unpublished.