Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of sumatran orangutan (Pongo abelii) IGHD IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
in the sequence
or D-REGION (*)
Clone namesIsolateAccession
in the sequence
or D-REGION (*)
IGHD1IGHD1-1 IGHD1-1*01 F Susie IMGT000122 [1] MAP 1091046-1091118
IGHD1IGHD1-6 IGHD1-6*01 ORF (1) Susie IMGT000122 [1] MAP 1099152-1099224
IGHD1IGHD1-12 IGHD1-12*01 F Susie IMGT000122 [1] MAP 1108576-1108648
IGHD1IGHD1-18 IGHD1-18*01 F Susie IMGT000122 [1] MAP 1117970-1118042
IGHD1IGHD1-24 IGHD1-24*01 F Susie IMGT000122 [1] MAP 1127375-1127447
IGHD1IGHD1-30 IGHD1-30*01 F Susie IMGT000122 [1] MAP 1137307-1137382
IGHD2IGHD2-7 IGHD2-7*01 F Susie IMGT000122 [1] MAP 1101825-1101911
IGHD2IGHD2-13 IGHD2-13*01 F Susie IMGT000122 [1] MAP 1111231-1111317
IGHD2IGHD2-19 IGHD2-19*01 ORF (2) Susie IMGT000122 [1] MAP 1120612-1120698
IGHD2IGHD2-25 IGHD2-25*01 ORF (2) Susie IMGT000122 [1] MAP 1130028-1130114
IGHD3IGHD3-2 IGHD3-2*01 F Susie IMGT000122 [1] MAP 1095252-1095338
IGHD3IGHD3-8 IGHD3-8*01 F Susie IMGT000122 [1] MAP 1104100-1104186
IGHD3IGHD3-14 IGHD3-14*01 F Susie IMGT000122 [1] MAP 1113839-1113925
IGHD3IGHD3-20 IGHD3-20*01 F Susie IMGT000122 [1] MAP 1122890-1122979
IGHD3IGHD3-26 IGHD3-26*01 F Susie IMGT000122 [1] MAP 1132304-1132396
IGHD4IGHD4-3 IGHD4-3*01 ORF (3) Susie IMGT000122 [1] MAP 1096151-1096222
IGHD4IGHD4-9 IGHD4-9*01 ORF (4) Susie IMGT000122 [1] MAP 1105250-1105321
IGHD4IGHD4-15 IGHD4-15*01 F Susie IMGT000122 [1] MAP 1114988-1115062
IGHD4IGHD4-21 IGHD4-21*01 ORF (5) Susie IMGT000122 [1] MAP 1124033-1124104
IGHD4IGHD4-27 IGHD4-27*01 ORF (6) Susie IMGT000122 [1] MAP 1133463-1133537
IGHD5IGHD5-4 IGHD5-4*01 F Susie IMGT000122 [1] MAP 1097109-1097187
IGHD5IGHD5-10 IGHD5-10*01 ORF (7) Susie IMGT000122 [1] MAP 1106212-1106287
IGHD5IGHD5-16 IGHD5-16*01 ORF (8) Susie IMGT000122 [1] MAP 1115946-1116021
IGHD5IGHD5-22 IGHD5-22*01 ORF (9) Susie IMGT000122 [1] MAP 1124995-1125073
IGHD5IGHD5-28 IGHD5-28*01 ORF (8) Susie IMGT000122 [1] MAP 1134428-1134503
IGHD6IGHD6-5 IGHD6-5*01 ORF (10) Susie IMGT000122 [1] MAP 1098979-1099055
IGHD6IGHD6-11 IGHD6-11*01 F Susie IMGT000122 [1] MAP 1108073-1108146
IGHD6IGHD6-17 IGHD6-17*01 F Susie IMGT000122 [1] MAP 1117459-1117538
IGHD6IGHD6-23 IGHD6-23*01 F Susie IMGT000122 [1] MAP 1126864-1126940
IGHD6IGHD6-29 IGHD6-29*01 F Susie IMGT000122 [1] MAP 1136802-1136875
IGHD7IGHD7-31 IGHD7-31*01 F Susie IMGT000122 [1] MAP 1159124-1159190
IMGT notes:
  1. noncanonical 5'D-NONAMER:ggataccaa instead of ggtttctga
  2. noncanonical 3'D-NONAMER:tcccaaagc instead of tccaaaact
  3. noncanonical 3'D-NONAMER:gaaaaactg instead of acaaaaacc
  4. noncanonical 5'D-HEPTAMER:tgctgtg instead of cactgtg
  5. noncanonical 3'D-NONAMER:ggaaaaact instead of tccaaaact
  6. noncanonical 5'D-HEPTAMER:tactgtt instead of cactgtg
  7. noncanonical 3'D-NONAMER:gcaccaacc instead of tccaaaact
  8. noncanonical 5'D-HEPTAMER:ggccgtg instead of cactgtg, noncanonical 3'D-NONAMER:gcagcaacc instead of tccaaaact
  9. noncanonical 3'D-NONAMER:gcggcaacc instead of tccaaaact
  10. noncanonical 3'D-NONAMER:caccccaca instead of acaaaaacc
IMGT references:
  1. Pollen,A. et al., High-resolution comparative analysis of great ape genomes, Unpublished.