Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Sumatran orangutan (Pongo abelii) IGHD IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)		Secondary
accession
numbers		Clone namesIsolateAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)
IGHD1IGHD1-1 IGHD1-1*01 F 14 Susie IMGT000122 [3] MAP 1091046-1091118 AG06213 IMGT000155 [2] 1095376-1095448
AG06213 IMGT000156 [1] 1201222-1201294
IGHD1IGHD1-6 IGHD1-6*01 ORF (1) 14 Susie IMGT000122 [3] MAP 1099152-1099224 AG06213 IMGT000155 [2] 1103483-1103555
AG06213 IMGT000156 [1] 1209329-1209401
IGHD1IGHD1-12 IGHD1-12*01 F 14 Susie IMGT000122 [3] MAP 1108576-1108648 AG06213 IMGT000155 [2] 1112924-1112996
AG06213 IMGT000156 [1] 1218775-1218847
IGHD1IGHD1-18 IGHD1-18*01 F 14 Susie IMGT000122 [3] MAP 1117970-1118042 AG06213 IMGT000156 [1] 1228154-1228226
IGHD1IGHD1-18 IGHD1-18*02 F 14 AG06213 IMGT000155 [2] MAP 1122302-1122374
IGHD1IGHD1-24 IGHD1-24*01 F 14 Susie IMGT000122 [3] MAP 1127375-1127447 AG06213 IMGT000155 [2] 1131707-1131779
AG06213 IMGT000156 [1] 1237558-1237630
IGHD1IGHD1-30 IGHD1-30*01 F 14 Susie IMGT000122 [3] MAP 1137307-1137382 AG06213 IMGT000155 [2] 1141637-1141712
AG06213 IMGT000156 [1] 1247491-1247566
IGHD2IGHD2-7 IGHD2-7*01 F 14 Susie IMGT000122 [3] MAP 1101825-1101911 AG06213 IMGT000155 [2] 1106156-1106242
AG06213 IMGT000156 [1] 1212007-1212093
IGHD2IGHD2-13 IGHD2-13*01 F 14 Susie IMGT000122 [3] MAP 1111231-1111317 AG06213 IMGT000155 [2] 1115578-1115664
AG06213 IMGT000156 [1] 1221430-1221516
IGHD2IGHD2-19 IGHD2-19*01 ORF (2) 14 Susie IMGT000122 [3] MAP 1120612-1120698 AG06213 IMGT000155 [2] 1124944-1125030
AG06213 IMGT000156 [1] 1230796-1230882
IGHD2IGHD2-25 IGHD2-25*01 ORF (2) 14 Susie IMGT000122 [3] MAP 1130028-1130114 AG06213 IMGT000155 [2] 1134360-1134446
AG06213 IMGT000156 [1] 1240211-1240297
IGHD3IGHD3-2 IGHD3-2*01 F 14 Susie IMGT000122 [3] MAP 1095252-1095338 AG06213 IMGT000155 [2] 1099582-1099668
AG06213 IMGT000156 [1] 1205428-1205514
IGHD3IGHD3-8 IGHD3-8*01 F 14 Susie IMGT000122 [3] MAP 1104100-1104186 AG06213 IMGT000155 [2] 1108447-1108533
AG06213 IMGT000156 [1] 1214298-1214384
IGHD3IGHD3-14 IGHD3-14*01 F 14 Susie IMGT000122 [3] MAP 1113839-1113925 AG06213 IMGT000156 [1] 1224022-1224108
IGHD3IGHD3-14 IGHD3-14*02 F 14 AG06213 IMGT000155 [2] MAP 1118170-1118256
IGHD3IGHD3-20 IGHD3-20*01 F 14 Susie IMGT000122 [3] MAP 1122890-1122979 AG06213 IMGT000155 [2] 1127222-1127311
AG06213 IMGT000156 [1] 1233073-1233162
IGHD3IGHD3-26 IGHD3-26*01 F 14 Susie IMGT000122 [3] MAP 1132304-1132396 AG06213 IMGT000155 [2] 1136633-1136725
AG06213 IMGT000156 [1] 1242487-1242579
IGHD4IGHD4-3 IGHD4-3*01 ORF (3) 14 Susie IMGT000122 [3] MAP 1096151-1096222 AG06213 IMGT000155 [2] 1100481-1100551
AG06213 IMGT000156 [1] 1206327-1206398
IGHD4IGHD4-9 IGHD4-9*01 ORF (4) 14 Susie IMGT000122 [3] MAP 1105250-1105321 AG06213 IMGT000155 [2] 1109597-1109668
AG06213 IMGT000156 [1] 1215448-1215519
IGHD4IGHD4-15 IGHD4-15*01 F 14 Susie IMGT000122 [3] MAP 1114988-1115062 AG06213 IMGT000155 [2] 1119322-1119396
AG06213 IMGT000156 [1] 1225174-1225248
IGHD4IGHD4-21 IGHD4-21*01 ORF (5) 14 Susie IMGT000122 [3] MAP 1124033-1124104 AG06213 IMGT000155 [2] 1128365-1128436
AG06213 IMGT000156 [1] 1234216-1234287
IGHD4IGHD4-27 IGHD4-27*01 ORF (6) 14 Susie IMGT000122 [3] MAP 1133463-1133537 AG06213 IMGT000155 [2] 1137792-1137866
AG06213 IMGT000156 [1] 1243646-1243720
IGHD5IGHD5-4 IGHD5-4*01 F 14 Susie IMGT000122 [3] MAP 1097109-1097187 AG06213 IMGT000155 [2] 1101439-1101517
AG06213 IMGT000156 [1] 1207285-1207363
IGHD5IGHD5-10 IGHD5-10*01 ORF (7) 14 Susie IMGT000122 [3] MAP 1106212-1106287
IGHD5IGHD5-10 IGHD5-10*02 ORF (8) 14 AG06213 IMGT000155 [2] MAP 1110559-1110634 AG06213 IMGT000156 [1] 1216410-1216485
IGHD5IGHD5-16 IGHD5-16*01 ORF (9) 14 Susie IMGT000122 [3] MAP 1115946-1116021 AG06213 IMGT000155 [2] 1120280-1120355
AG06213 IMGT000156 [1] 1226132-1226207
IGHD5IGHD5-22 IGHD5-22*01 ORF (10) 14 Susie IMGT000122 [3] MAP 1124995-1125073 AG06213 IMGT000155 [2] 1129327-1129405
AG06213 IMGT000156 [1] 1235178-1235256
IGHD5IGHD5-28 IGHD5-28*01 ORF (9) 14 Susie IMGT000122 [3] MAP 1134428-1134503 AG06213 IMGT000155 [2] 1138757-1138832
AG06213 IMGT000156 [1] 1244611-1244686
IGHD6IGHD6-5 IGHD6-5*01 ORF (11) 14 Susie IMGT000122 [3] MAP 1098979-1099055 AG06213 IMGT000155 [2] 1103310-1103386
AG06213 IMGT000156 [1] 1209156-1209232
IGHD6IGHD6-11 IGHD6-11*01 F 14 Susie IMGT000122 [3] MAP 1108073-1108146 AG06213 IMGT000155 [2] 1112421-1112494
AG06213 IMGT000156 [1] 1218272-1218345
IGHD6IGHD6-17 IGHD6-17*01 F 14 Susie IMGT000122 [3] MAP 1117459-1117538 AG06213 IMGT000155 [2] 1121791-1121870
AG06213 IMGT000156 [1] 1227643-1227722
IGHD6IGHD6-23 IGHD6-23*01 F 14 Susie IMGT000122 [3] MAP 1126864-1126940 AG06213 IMGT000155 [2] 1131196-1131272
AG06213 IMGT000156 [1] 1237047-1237123
IGHD6IGHD6-29 IGHD6-29*01 F 14 Susie IMGT000122 [3] MAP 1136802-1136875 AG06213 IMGT000155 [2] 1141132-1141205
AG06213 IMGT000156 [1] 1246986-1247059
IGHD7IGHD7-31 IGHD7-31*01 F 14 Susie IMGT000122 [3] MAP 1159124-1159190 AG06213 IMGT000155 [2] 1163457-1163523
AG06213 IMGT000156 [1] 1269291-1269357
IMGT notes: ↑
  1. noncanonical 5'D-NONAMER:ggataccaa instead of ggtttctga
  2. noncanonical 3'D-NONAMER:tcccaaagc instead of tccaaaact
  3. noncanonical 3'D-NONAMER:gaaaaactg instead of acaaaaacc
  4. noncanonical 5'D-HEPTAMER:tgctgtg instead of cactgtg
  5. noncanonical 3'D-NONAMER:ggaaaaact instead of tccaaaact
  6. noncanonical 5'D-HEPTAMER:tactgtt instead of cactgtg
  7. noncanonical 3'D-NONAMER:gcaccaacc instead of tccaaaact
  8. noncanonical 3'D-NONAMER:gcagcaacc instead of tccaaaact
  9. noncanonical 5'D-HEPTAMER:ggccgtg instead of cactgtg, noncanonical 3'D-NONAMER:gcagcaacc instead of tccaaaact
  10. noncanonical 3'D-NONAMER:gcggcaacc instead of tccaaaact
  11. noncanonical 3'D-NONAMER:caccccaca instead of acaaaaacc
IMGT references: ↑
  1. Koren S. et al., Complete, haplotype-resolved assemblies of non-human primate chromosomes X and Y, Unpublished.
  2. Makova K.D. et al., The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes, Unpublished.
  3. Pollen,A. et al., High-resolution comparative analysis of great ape genomes, Unpublished.