Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Sumatran orangutan (Pongo abelii) IGHJ IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)		Secondary
accession
numbers		Clone namesIsolateAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
IGHJ1 IGHJ1*01 P (1) 14 Susie IMGT000122 [3] MAP 1158999-1159084 AG06213 IMGT000155 [2] 1163332-1163417
AG06213 IMGT000156 [1] 1269166-1269251
IGHJ2 IGHJ2*01 F 14 Susie IMGT000122 [3] MAP 1159216-1159305 AG06213 IMGT000155 [2] 1163549-1163638
AG06213 IMGT000156 [1] 1269383-1269472
IGHJ3 IGHJ3*01 ORF (2) 14 Susie IMGT000122 [3] MAP 1159423-1159513 AG06213 IMGT000155 [2] 1163756-1163846
AG06213 IMGT000156 [1] 1269590-1269680
IGHJ4 IGHJ4*01 ORF (3) 14 Susie IMGT000122 [3] MAP 1159822-1159912 AG06213 IMGT000155 [2] 1164155-1164245
AG06213 IMGT000156 [1] 1269989-1270079
IGHJ5 IGHJ5*01 F 14 Susie IMGT000122 [3] MAP 1160037-1160125 AG06213 IMGT000156 [1] 1270204-1270292
IGHJ5 IGHJ5*02 F 14 AG06213 IMGT000155 [2] MAP 1164370-1164458
IGHJ6 IGHJ6*01 F 14 Susie IMGT000122 [3] MAP 1160411-1160497 AG06213 IMGT000156 [1] 1270578-1270664
IGHJ6 IGHJ6*02 F 14 AG06213 IMGT000155 [2] MAP 1164744-1164830
IGHJ7 IGHJ7*01 ORF (4) 14 Susie IMGT000122 [3] MAP 1160812-1160901 AG06213 IMGT000156 [1] 1270979-1271068
IGHJ7 IGHJ7*02 ORF (4) 14 AG06213 IMGT000155 [2] MAP 1165145-1165234
IGHJ8 IGHJ8*01 P (1) 14 Susie IMGT000122 [3] MAP 1161212-1161299 AG06213 IMGT000155 [2] 1165546-1165633
AG06213 IMGT000156 [1] 1271379-1271466
IGHJ9 IGHJ9*01 ORF (5) 14 Susie IMGT000122 [3] MAP 1161417-1161508 AG06213 IMGT000156 [1] 1271584-1271675
IGHJ9 IGHJ9*02 ORF (5) 14 AG06213 IMGT000155 [2] MAP 1165751-1165842
IMGT notes: ↑
  1. frameshift in J-REGION
  2. noncanonical J-HEPTAMER:ggctgtg instead of cactgtg
  3. noncanonical J-HEPTAMER: tagtgtg instead of cactgtg, noncanonical J-NONAMER: tgttcatgt instead of ggtttttgt, noncanonical J-MOTIF: WSXG instead of WGXG, noncanonical DONOR-SPLICE: ngg instead of ngt
  4. noncanonical J-NONAMER:agttcttgc instead of ggtttttgt
  5. noncanonical J-MOTIF:WTXG instead of WGXG
IMGT references: ↑
  1. Koren S. et al., Complete, haplotype-resolved assemblies of non-human primate chromosomes X and Y, Unpublished.
  2. Makova K.D. et al., The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes, Unpublished.
  3. Pollen,A. et al., High-resolution comparative analysis of great ape genomes, Unpublished.