Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of sumatran orangutan (Pongo abelii) IGLV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation
Chromosomosal
localization
R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
Secondary
accession
numbers
IsolateClone namesAccession
numbers
Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGLV1IGLV1-56 IGLV1-56*01 F Susie IMGT000108 [1] MAP 325974-326480
IGLV1IGLV1-60 IGLV1-60*01 F Susie IMGT000108 [1] MAP 299611-300117
IGLV1IGLV1-61 IGLV1-61*01 F Susie IMGT000108 [1] MAP 294015-294515
IGLV1IGLV1-70 IGLV1-70*01 (1) Susie IMGT000108 [1] MAP 248721-249223
IGLV1IGLV1-71 IGLV1-71*01 (2) Susie IMGT000108 [1] MAP 245271-245771
IGLV1IGLV1-82 IGLV1-82*01 F Susie IMGT000108 [1] MAP 192056-192573
IGLV1IGLV1-100 IGLV1-100*01 (3) Susie IMGT000108 [1] MAP 96374-96871
IGLV1IGLV1-101 IGLV1-101*01 (4) Susie IMGT000108 [1] MAP 88760-89058 *
IGLV2IGLV2-7 IGLV2-7*01 (5) Susie IMGT000108 [1] MAP 761152-761657
IGLV2IGLV2-11 IGLV2-11*01 F Susie IMGT000108 [1] MAP 724101-724608
IGLV2IGLV2-15 IGLV2-15*01 ORF (6) Susie IMGT000108 [1] MAP 693311-693803
IGLV2IGLV2-20 IGLV2-20*01 F Susie IMGT000108 [1] MAP 662893-663402
IGLV2IGLV2-24 IGLV2-24*01 F Susie IMGT000108 [1] MAP 629550-630059
IGLV2IGLV2-30 IGLV2-30*01 F Susie IMGT000108 [1] MAP 605404-605903
IGLV2IGLV2-32 IGLV2-32*01 F Susie IMGT000108 [1] MAP 592958-593457
IGLV2IGLV2-43 IGLV2-43*01 (7) Susie IMGT000108 [1] MAP 521762-522046 *
IGLV2IGLV2-48 IGLV2-48*01 (8) Susie IMGT000108 [1] MAP 480696-481210
IGLV2IGLV2-49 IGLV2-49*01 (9) Susie IMGT000108 [1] MAP 472412-472920
IGLV2IGLV2-50 IGLV2-50*01 (10) Susie IMGT000108 [1] MAP <457528->457820 *
IGLV3IGLV3-1 IGLV3-1*01 F Susie IMGT000108 [1] MAP 811165-811836
IGLV3IGLV3-2 IGLV3-2*01 (11) Susie IMGT000108 [1] MAP 807068-807706
IGLV3IGLV3-3 IGLV3-3*01 (12) Susie IMGT000108 [1] MAP 803042-803548
IGLV3IGLV3-4 IGLV3-4*01 (13) Susie IMGT000108 [1] MAP 798781-799292
IGLV3IGLV3-6 IGLV3-6*01 (14) Susie IMGT000108 [1] MAP 767485-768000
IGLV3IGLV3-8 IGLV3-8*01 (15) Susie IMGT000108 [1] MAP 754365-754885
IGLV3IGLV3-9 IGLV3-9*01 (16) Susie IMGT000108 [1] MAP 742764-743051 *
IGLV3IGLV3-12 IGLV3-12*01 (17) Susie IMGT000108 [1] MAP 719359-720029
IGLV3IGLV3-13 IGLV3-13*01 (18) Susie IMGT000108 [1] MAP 710555-711091
IGLV3IGLV3-14 IGLV3-14*01 (19) Susie IMGT000108 [1] MAP 698593-698878 *
IGLV3IGLV3-16 IGLV3-16*01 F Susie IMGT000108 [1] MAP 689780-690293
IGLV3IGLV3-18 IGLV3-18*01 F Susie IMGT000108 [1] MAP 682254-682792
IGLV3IGLV3-22 IGLV3-22*01 (20) Susie IMGT000108 [1] MAP 642271-642906
IGLV3IGLV3-23 IGLV3-23*01 (21) Susie IMGT000108 [1] MAP 632692-633225
IGLV3IGLV3-25 IGLV3-25*01 (12) Susie IMGT000108 [1] MAP 625855-626526
IGLV3IGLV3-27 IGLV3-27*01 F Susie IMGT000108 [1] MAP 618090-618629
IGLV3IGLV3-29 IGLV3-29*01 (22) Susie IMGT000108 [1] MAP 609686-609974 *
IGLV3IGLV3-31 IGLV3-31*01 (23) Susie IMGT000108 [1] MAP 596122-596656
IGLV3IGLV3-33 IGLV3-33*01 F Susie IMGT000108 [1] MAP 576712-577243
IGLV3IGLV3-35 IGLV3-35*01 F Susie IMGT000108 [1] MAP 568467-569273
IGLV3IGLV3-36 IGLV3-36*01 F Susie IMGT000108 [1] MAP 560564-561378
IGLV3IGLV3-37 IGLV3-37*01 F Susie IMGT000108 [1] MAP 552454-552985
IGLV3IGLV3-39 IGLV3-39*01 F Susie IMGT000108 [1] MAP 544346-544897
IGLV3IGLV3-41 IGLV3-41*01 (24) Susie IMGT000108 [1] MAP 530285-530818
IGLV3IGLV3-42 IGLV3-42*01 F Susie IMGT000108 [1] MAP 525454-525975
IGLV3IGLV3-44 IGLV3-44*01 (25) Susie IMGT000108 [1] MAP 517838-518503
IGLV3IGLV3-45 IGLV3-45*01 (26) Susie IMGT000108 [1] MAP 511744-512281
IGLV3IGLV3-46 IGLV3-46*01 (9) Susie IMGT000108 [1] MAP 497259-497779
IGLV3IGLV3-47 IGLV3-47*01 ORF (27) Susie IMGT000108 [1] MAP 487020-487548
IGLV4IGLV4-10 IGLV4-10*01 (28) Susie IMGT000108 [1] MAP 738853-739392
IGLV4IGLV4-19 IGLV4-19*01 (29) Susie IMGT000108 [1] MAP 673263-673798
IGLV4IGLV4-67 IGLV4-67*01 F Susie IMGT000108 [1] MAP 261311-261829
IGLV4IGLV4-74 IGLV4-74*01 (30) Susie IMGT000108 [1] MAP 226811->227111 *
IGLV4IGLV4-81 IGLV4-81*01 ORF (31) Susie IMGT000108 [1] MAP 196905-197421
IGLV4IGLV4-91 IGLV4-91*01 (32) Susie IMGT000108 [1] MAP 144643->144939 *
IGLV4IGLV4-95 IGLV4-95*01 (9) Susie IMGT000108 [1] MAP 125005-125527
IGLV5IGLV5-53 IGLV5-53*01 (33) Susie IMGT000108 [1] MAP 361454-361977
IGLV5IGLV5-57 IGLV5-57*01 F Susie IMGT000108 [1] MAP 321135-321663
IGLV5IGLV5-62 IGLV5-62*01 F Susie IMGT000108 [1] MAP 290251-290783
IGLV5IGLV5-72 IGLV5-72*01 (2) Susie IMGT000108 [1] MAP 240694-241217
IGLV5IGLV5-73 IGLV5-73*01 (34) Susie IMGT000108 [1] MAP 235759-236280
IGLV5IGLV5-75 IGLV5-75*01 (35) Susie IMGT000108 [1] MAP 223886-224407
IGLV5IGLV5-92 IGLV5-92*01 (36) Susie IMGT000108 [1] MAP <141303->141612 *
IGLV5IGLV5-97 IGLV5-97*01 (5) Susie IMGT000108 [1] MAP 113189-113701
IGLV5IGLV5-98 IGLV5-98*01 ORF (37) Susie IMGT000108 [1] MAP 109292-109823
IGLV5IGLV5-99 IGLV5-99*01 (38) Susie IMGT000108 [1] MAP 101321-101853
IGLV6IGLV6-64 IGLV6-64*01 (15) Susie IMGT000108 [1] MAP 278760-279245
IGLV6IGLV6-84 IGLV6-84*01 ORF (39) Susie IMGT000108 [1] MAP 186559-187077
IGLV6IGLV6-90 IGLV6-90*01 F Susie IMGT000108 [1] MAP 157839-158355
IGLV7IGLV7-51 IGLV7-51*01 (40) Susie IMGT000108 [1] MAP 368574->368864 *
IGLV7IGLV7-55 IGLV7-55*01 (41) Susie IMGT000108 [1] MAP 340098-340587
IGLV7IGLV7-59 IGLV7-59*01 F Susie IMGT000108 [1] MAP 309335-309816
IGLV7IGLV7-68 IGLV7-68*01 (42) Susie IMGT000108 [1] MAP 257916-258390
IGLV7IGLV7-93 IGLV7-93*01 (43) Susie IMGT000108 [1] MAP 131014-131488
IGLV7IGLV7-96 IGLV7-96*01 (44) Susie IMGT000108 [1] MAP 121720-122174
IGLV8IGLV8-103 IGLV8-103*01 F Susie IMGT000108 [1] MAP 32111-32602
IGLV9IGLV9-63 IGLV9-63*01 (45) Susie IMGT000108 [1] MAP <284773-285087 *
IGLV10IGLV10-77 IGLV10-77*01 (46) Susie IMGT000108 [1] MAP 209561-209855 *
IGLV10IGLV10-83 IGLV10-83*01 (47) Susie IMGT000108 [1] MAP 190105->190379 *
IGLV10IGLV10-86 IGLV10-86*01 ORF (48) Susie IMGT000108 [1] MAP 176802-177306
IGLV11IGLV11-87 IGLV11-87*01 F Susie IMGT000108 [1] MAP 163708-164233
IMGT notes:
  1. STOP-CODON in L-PART1, several STOP-CODON in V-REGION
  2. frameshifts in V-REGION: several insertions and deletions
  3. frameshift in L-PART1, frameshift in V-REGION: insertion of 1 nt in FR1-IMGT
  4. no L-PART1, several STOP-CODON in V-REGION: position 43, 105, frameshifts in V-REGION: several insertions and deletions
  5. frameshift in V-REGION: deletion of 4 nt in FR1-IMGT
  6. deletions in CDR1-IMGT: 5 AA are missing
  7. frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  8. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  9. several STOP-CODON in V-REGION
  10. no L-PART1, no L-PART2, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT, no V-RS
  11. STOP-CODON in L-PART1, several STOP-CODON in V-REGION, frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
  12. frameshift in L-PART1, frameshifts in V-REGION: several insertions and deletions
  13. STOP-CODON in L-PART1, STOP-CODON in V-REGION: position 75, frameshift in V-REGION: deletion of 4 nt in FR3-IMGT
  14. frameshift in L-PART2, STOP-CODON in V-REGION: position 25, frameshifts in V-REGION: several insertions and deletions
  15. no L-PART2, frameshifts in V-REGION: several insertions and deletions
  16. no L-PART1, frameshifts in V-REGION: several insertions and deletions
  17. no L-PART2, STOP-CODON in V-REGION: position 75
  18. STOP-CODON in V-REGION: position 38, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  19. frameshift in V-REGION: deletion of 4 nt in FR3-IMGT, no V-NONAMER
  20. STOP-CODON in L-PART1, no DONOR-SPLICE
  21. no INIT-CODON: Thr instead of Met, STOP-CODON in V-REGION: position 109
  22. no DONOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR3-IMGT, no V-NONAMER
  23. STOP-CODON in V-REGION: position 109
  24. no INIT-CODON:Val instead of Met, STOP-CODON in L-PART1, no DONOR-SPLICE, frameshifts in V-REGION: insertion of 11 nt and deletion of 1 nt in FR3-IMGT
  25. STOP-CODON in V-REGION: position 40, frameshifts in V-REGION: deletion of 2 nt and deletion of 5 nt in FR3-IMGT
  26. no DONOR-SPLICE, frameshift in V-REGION: insertion of 5 nt in FR3-IMGT
  27. noncanonical ACCEPTOR-SPLICE:nggnn instead of nagnn, no 2nd-CYS:Tyr instead of Cys
  28. no INIT-CODON: Ala instead of Met, several STOP-CODON in V-REGION
  29. no INIT-CODON: Arg instead of Met, several STOP-CODON in V-REGION
  30. frameshift in V-REGION: deletion of 2 nt in FR1-IMGT, no V-RS
  31. no CONSERVED-TRP:Cys instead of Trp
  32. frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions, no V-RS
  33. no INIT-CODON:Thr instead of Met, frameshift in V-REGION: insertion of 1 nt in CDR1-IMGT
  34. several STOP-CODON in V-REGION, frameshifts in V-REGION: several insertions and deletions
  35. frameshift in V-REGION: insertion of 2 nt in FR3-IMGT
  36. no L-PART2, partial in 5', frameshifts in V-REGION: several insertions and deletions, no V-RS
  37. noncanonical V-NONAMER:caaaaagcc instead of acacaaacc
  38. no L-PART2, partial in 5', frameshifts in V-REGION: insertion of 1 nt in FR3-IMGT
  39. noncanonical V-NONAMER:acaagaact instead of acacaaacc
  40. no INIT-CODON:Thr instead of Met, frameshifts in V-REGION: several insertions and deletions, no V-RS
  41. frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  42. no INIT-CODON:Val instead of Met, no ACCEPTOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  43. several STOP-CODON in V-REGION: position 1, 15, 70, 75, 99 and 104, no 2nd-CYS: STOP-CODON instead of Cys
  44. no L-PART2, STOP-CODON in V-REGION: position 15, frameshifts in V-REGION: several insertions and deletions, no INIT-CODON:Ile instead of Met
  45. no L-PART1, no L-PART2, frameshifts in V-REGION: several insertions and deletions
  46. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT, no V-NONAMER
  47. no L-PART1, STOP-CODON in V-REGION: position 18, frameshifts in V-REGION: several insertions and deletions, no V-RS
  48. noncanonical V-NONAMER:ataaaaact instead of acacaaacc
IMGT references:
  1. Pollen,A. et al., High-resolution comparative analysis of great ape genomes, Unpublished.