Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Sumatran orangutan (Pongo abelii) TRBC IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers		Positions
in the sequence		Secondary
accession
numbers		Clone namesIsolateAccession
numbers		Positions
in the sequence
TRBC1 TRBC1*01 F 6 EX1 AG06213 IMGT000250 [1] MAP 671777-672163
TRBC1 TRBC1*01 F 6 EX2 AG06213 IMGT000250 [1] MAP 672604-672621
TRBC1 TRBC1*01 F 6 EX3 AG06213 IMGT000250 [1] MAP 672774-672880
TRBC1 TRBC1*01 F 6 EX4 AG06213 IMGT000250 [1] MAP 673210-673227
TRBC1 TRBC1*02 F 6 EX1 AG06213 IMGT000254 [1] MAP 712500-712886 Susie IMGT000269 [2] 675859-676245
TRBC1 TRBC1*02 F 6 EX2 AG06213 IMGT000254 [1] MAP 713324-713341 Susie IMGT000269 [2] 676683-676700
TRBC1 TRBC1*02 F 6 EX3 AG06213 IMGT000254 [1] MAP 713494-713600 Susie IMGT000269 [2] 676853-676959
TRBC1 TRBC1*02 F 6 EX4 AG06213 IMGT000254 [1] MAP 713930-713947 Susie IMGT000269 [2] 677289-677306
TRBC1 TRBC1*03 F 6 EX1 Susie IMGT000270 [2] 673898-674284
TRBC1 TRBC1*03 F 6 EX2 Susie IMGT000270 [2] 674725-674742
TRBC1 TRBC1*03 F 6 EX3 Susie IMGT000270 [2] 674895-675001
TRBC1 TRBC1*03 F 6 EX4 Susie IMGT000270 [2] 675331-675348
TRBC2 TRBC2*01 F 6 EX1 AG06213 IMGT000250 [1] MAP 681235-681621
TRBC2 TRBC2*01 F 6 EX2 AG06213 IMGT000250 [1] MAP 682137-682154
TRBC2 TRBC2*01 F 6 EX3 AG06213 IMGT000250 [1] MAP 682300-682406
TRBC2 TRBC2*01 F 6 EX4 AG06213 IMGT000250 [1] MAP 682698-682715
TRBC2 TRBC2*02 F 6 EX1 AG06213 IMGT000254 [1] MAP 721952-722338 Susie IMGT000269 [2] 685311-685697
TRBC2 TRBC2*02 F 6 EX2 AG06213 IMGT000254 [1] MAP 722854-722871 Susie IMGT000269 [2] 686213-686230
TRBC2 TRBC2*02 F 6 EX3 AG06213 IMGT000254 [1] MAP 723017-723123 Susie IMGT000269 [2] 686376-686482
TRBC2 TRBC2*02 F 6 EX4 AG06213 IMGT000254 [1] MAP 723415-723432 Susie IMGT000269 [2] 686774-686791
TRBC2 TRBC2*03 F 6 EX1 Susie IMGT000270 [2] 683402-683788
TRBC2 TRBC2*03 F 6 EX2 Susie IMGT000270 [2] 684304-684321
TRBC2 TRBC2*03 F 6 EX3 Susie IMGT000270 [2] 684467-684573
TRBC2 TRBC2*03 F 6 EX4 Susie IMGT000270 [2] 684865-684882
IMGT references: ↑
  1. Makova K.D. et al., The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes, Unpublished.
  2. Mao Y. et al., Structurally divergent and recurrently mutated regions of primate genomes, bioRxiv (2023), PUBMED: 36945442