Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Add the possibility to obtain a gene table per strain (for mouse now and for other species later) and allotypes/isotypes for human.
September 25th, 2024.

Bibliographical references in alphabetic order, small design changes and addition of "NL" for non-localized gene.
June 14th, 2024.

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star () indicates that no instances of the allele have been identified in the literature. Two stars () indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of Sumatran orangutan (Pongo abelii) TRBJ IMGT group:
IMGT gene nameIMGT allele nameScore for
IMGT allele
confirmation		FctChromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
Clone namesIsolateAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)		Secondary
accession
numbers		Clone namesIsolateAccession
numbers		Positions
in the sequence
(J-GENE-UNIT)
or J-REGION (*)
TRBJ1-1 TRBJ1-1*01 P (1) 6 AG06213 IMGT000250 [1] MAP 666940-667014 AG06213 IMGT000254 [1] 707654-707729
Susie IMGT000269 [2] 671013-671087
Susie IMGT000270 [2] 669054-669128
TRBJ1-2 TRBJ1-2*01 F 6 AG06213 IMGT000250 [1] MAP 667078-667153 AG06213 IMGT000254 [1] 707792-707867
Susie IMGT000269 [2] 671151-671226
Susie IMGT000270 [2] 669192-669267
TRBJ1-3 TRBJ1-3*01 F 6 AG06213 IMGT000250 [1] MAP Unknown AG06213 IMGT000254 [1] 708411-708488
Susie IMGT000269 [2] 671770-671847
Susie IMGT000270 [2] 669809-669886
TRBJ1-4 TRBJ1-4*01 F 6 AG06213 IMGT000250 [1] MAP 668293-668371 Susie IMGT000269 [2] 672366-672443
Susie IMGT000270 [2] 670405-670482
TRBJ1-5 TRBJ1-5*01 F 6 AG06213 IMGT000250 [1] MAP 668565-668642
TRBJ1-5 TRBJ1-5*02 F 6 AG06213 IMGT000254 [1] MAP 709278-709355 Susie IMGT000269 [2] 672637-672714
TRBJ1-5 TRBJ1-5*03 F 6 Susie IMGT000270 [2] 670676-670753
TRBJ1-6 TRBJ1-6*01 F 6 AG06213 IMGT000250 [1] MAP 669042-669122 AG06213 IMGT000254 [1] 709755-709835
Susie IMGT000269 [2] 673114-673194
Susie IMGT000270 [2] 671153-671233
TRBJ2-1 TRBJ2-1*01 F 6 AG06213 IMGT000250 [1] MAP 676428-676505 Susie IMGT000270 [2] 678548-678625
TRBJ2-1 TRBJ2-1*02 P (2) 6 AG06213 IMGT000254 [1] MAP 717146-717223 Susie IMGT000269 [2] 680505-680582
TRBJ2-2 TRBJ2-2*01 F 6 AG06213 IMGT000250 [1] MAP 676623-676701 AG06213 IMGT000254 [1] 717341-717419
Susie IMGT000269 [2] 680700-680778
Susie IMGT000270 [2] 678743-678821
TRBJ2-3 TRBJ2-3*01 ORF (3) 6 AG06213 IMGT000250 [1] MAP 676760-676833 AG06213 IMGT000254 [1] 717478-717551
Susie IMGT000269 [2] 680837-680910
Susie IMGT000270 [2] 678880-678953
TRBJ2-4 TRBJ2-4*01 F 6 AG06213 IMGT000250 [1] MAP 676910-676986 Susie IMGT000269 [2] 680987-681063
Susie IMGT000270 [2] 679030-679106
TRBJ2-5 TRBJ2-5*01 F 6 AG06213 IMGT000250 [1] MAP 677059-677135 AG06213 IMGT000254 [1] 717777-717853
Susie IMGT000269 [2] 681136-681212
TRBJ2-5 TRBJ2-5*02 F 6 Susie IMGT000270 [2] 679178-679254
TRBJ2-6 TRBJ2-6*01 F 6 AG06213 IMGT000250 [1] MAP 677179-677254 AG06213 IMGT000254 [1] 717897-717972
Susie IMGT000269 [2] 681256-681331
Susie IMGT000270 [2] 679298-679373
TRBJ2-7 TRBJ2-7*01 F 6 AG06213 IMGT000250 [1] MAP 677293-677373 AG06213 IMGT000254 [1] 718011-718091
Susie IMGT000269 [2] 681370-681450
Susie IMGT000270 [2] 679418-679498
TRBJ2-8 TRBJ2-8*01 F 6 AG06213 IMGT000250 [1] MAP 677510-677584 AG06213 IMGT000254 [1] 718228-718302
Susie IMGT000269 [2] 681587-681661
Susie IMGT000270 [2] 679635-679709
IMGT notes: ↑
  1. STOP-CODON in J-REGION: 7
  2. STOP-CODON in J-REGION
  3. noncanonical J-NONAMER: cagctgccc instead of ggtttttgt, noncanonical J-MOTIF: LGXG instead of FGXG
IMGT references: ↑
  1. Makova K.D. et al., The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes, Unpublished.
  2. Mao Y. et al., Structurally divergent and recurrently mutated regions of primate genomes, bioRxiv (2023), PUBMED: 36945442