Citing IMGT dynamic tools: Sanou G., Zeitoun G. et al. IMGT® at scale: FAIR, Dynamic and Automated Tools for Immune Locus Analysis, Nucleic Acids Research. 2025;,gkaf1024. doi: 10.1093/nar/gkaf1024 (Free Article) PMID: 41091930.
Select a species and a locus:
Only IMGT available species/locus are shown in the drop-down list.

House mouse (Mus musculus) IGL locus (on chromosome 16 at 16A3 (13.0 cM)) gene repertoire per assembly:

House mouse (Mus musculus) IGLV gene numbers per subgroup in IMGT annotated assemblies:

For each available species and locus, the evaluation of a locus gene repertoire is displayed in tables per gene type: V, D, J or C.
The first column on the left lists either IMGT subgroups for V genes, or IMGT sets or subgroups for D and J genes, or IMGT gene names for constant genes. Clicking on the link provides the lists of corresponding IMGT alleles per IMGT functionality.
Columns in «IMGT annotated assemblies» display for each IMGT annotated assembly the number of IMGT genes per functionality.
The two columns in «Number of genes» are shown only if there is more than one IMGT annotated assembly. These columns display the numbers of genes which are either «common to all IMGT annotated assemblies» or «Not common to all IMGT annotated assemblies».
The numbers of IMGT genes in the tables are provided per functionality (F for functional, O for ORF, P for pseudogene). If IMGT alleles for a given IMGT gene have different functionalities, these are concatenated (for example: 1 FOP).

Subgroup IMGT annotated assembliesNumber of genes
GRCm39BALB_cJ_v3DBA_2J_v3Common to all IMGT
annotated assemblies		Not common to all IMGT
annotated assemblies
IGLV12 F2 F2 F2 F0
IGLV21 F1 F1 F1 F0
Total number of IMGT genes3 F
100%
3 F
100%
3 F
100%
3 F0
House mouse (Mus musculus) IGLJ gene numbers per set or subgroup in IMGT annotated assemblies:
Set or subgroup IMGT annotated assembliesNumber of genes
GRCm39BALB_cJ_v3DBA_2J_v3Common to all IMGT
annotated assemblies		Not common to all IMGT
annotated assemblies
IGLJ11 F1 F1 F1 F0
IGLJ21 F1 F1 F1 F0
IGLJ2P1 O1 O1 O1 O0
IGLJ31 F1 F1 F1 F0
IGLJ3P1 P1 P1 P1 P0
IGLJ41 O1 O1 O1 O0
Total number of IMGT genes3 F + 2 O + 1 P
50%
33%
17%
3 F + 2 O + 1 P
50%
33%
17%
3 F + 2 O + 1 P
50%
33%
17%
3 F + 2 O + 1 P0
House mouse (Mus musculus) IGLC gene numbers per gene name in IMGT annotated assemblies:
Gene name IMGT annotated assembliesNumber of genes
GRCm39BALB_cJ_v3DBA_2J_v3Common to all IMGT
annotated assemblies		Not common to all IMGT
annotated assemblies
IGLC11 F1 F1 F1 F0
IGLC21 F1 F1 F1 F0
IGLC31 F1 F1 F1 F0
IGLC41 F1 F1 F1 F0
Total number of IMGT genes4 F
100%
4 F
100%
4 F
100%
4 F0
House mouse (Mus musculus) IGL alleles per subgroup (set or gene name) and functionality in IMGT annotated assemblies:

The table displays IMGT alleles identified for House mouse (Mus musculus) IGL locus per subgroup and functionality (F, O, P) in IMGT annotated assemblies.
Sign # indicates IMGT genes which are not common to all IMGT annotated assemblies.

Subgroup (set or gene name) GRCm39 BALB_cJ_v3 DBA_2J_v3
F O P F O P F O P
More information:
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