Bornean orangutan (Pongo pygmaeus) IGHV genes
The Bornean orangutan (
Pongo pygmaeus) IGH locus on chromosome 14 comprises 167 IGHV genes belonging to 7 IGHV subgroups and 4 clans :
IMGT group |
IMGT subgroup |
Functional |
ORF |
Pseudogene |
Total |
IGHV |
IGHV1 |
6 |
3 |
13(6:7) |
22 |
IGHV2 |
4 |
1 |
0 |
5 |
IGHV3 |
30 |
2 |
33(15:18) |
65 |
IGHV4 |
12 |
0 |
2(2:0) |
14 |
IGHV5 |
1 |
1 |
1(1:0) |
3 |
IGHV7 |
1 |
1 |
3(2:1) |
5 |
IGHV8 |
0 |
0 |
2(1:1) |
2 |
IGHV(I) |
0 |
0 |
1(0:1) |
1 |
IGHV(II) |
0 |
0 |
30(0:30) |
30 |
IGHV(III) |
0 |
0 |
19(0:19) |
19 |
IGHV(IV) |
0 |
0 |
1(0:1) |
1 |
Total |
54 |
8 |
105 |
167 |
In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown
separated by two dots, between parentheses.
Bornean orangutan (Pongo pygmaeus) IGHD genes
The Bornean orangutan (
Pongo pygmaeus) IGH locus on chromosome 14 comprises 31 IGHD genes :
IMGT group |
IMGT set or subgroup (if any) |
Functional |
ORF |
Pseudogene |
Total |
IGHD |
IGHD1 |
5 |
1 |
0 |
6 |
IGHD2 |
2 |
2 |
0 |
4 |
IGHD3 |
5 |
0 |
0 |
5 |
IGHD4 |
1 |
4 |
0 |
5 |
IGHD5 |
1 |
4 |
0 |
5 |
IGHD6 |
4 |
1 |
0 |
5 |
IGHD7 |
1 |
0 |
0 |
1 |
Total |
19 |
12 |
0 |
31 |
Bornean orangutan (Pongo pygmaeus) IGHJ genes
The Bornean orangutan (
Pongo pygmaeus) IGH locus on chromosome 14 comprises 9 IGHJ genes :
IMGT group |
IMGT set or subgroup (if any) |
Functional |
ORF |
Pseudogene |
Total |
IGHJ |
IGHJ1 |
0 |
0 |
1 |
1 |
IGHJ2 |
1 |
0 |
0 |
1 |
IGHJ3 |
0 |
1 |
0 |
1 |
IGHJ4 |
0 |
1 |
0 |
1 |
IGHJ5 |
1 |
0 |
0 |
1 |
IGHJ6 |
1 |
0 |
0 |
1 |
IGHJ7 |
0 |
1 |
0 |
1 |
IGHJ8 |
0 |
0 |
1 |
1 |
IGHJ9 |
0 |
1 |
0 |
1 |
Total |
3 |
4 |
2 |
9 |
More information:
Gene table: Bornean orangutan (Pongo pygmaeus) IGHV
Gene table: Bornean orangutan (Pongo pygmaeus) IGHD
Gene table: Bornean orangutan (Pongo pygmaeus) IGHJ
Locus description: Bornean orangutan (Pongo pygmaeus) IGH