IMGT Repertoire (IG and TR)

Potential germline repertoire: Bornean orangutan (Pongo pygmaeus) IGLV and IGLJ genes

For a comparative repertoire between different assemblies' annotations, see: Bornean orangutan (Pongo pygmaeus) IGL locus gene repertoire per assembly.

Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

Bornaen orangutan (Pongo pygmaeus) IGLV genes

The Bornean orangutan (Pongo pygmaeus) IGL locus comprises 113 IGLV genes belonging to 11 IGLV subgroups and 6 clans :

IMGT group	IMGT subgroup	Functional	Pseudogene	Total
IGLV	IGLV1	7	4(1:3)	11
	IGLV2	6	5(1:4)	11
	IGLV3	9	19(7:12)	28
	IGLV4	3	4(2:2)	7
	IGLV5	2	9(1:8)	11
	IGLV6	2	1(0:1)	3
	IGLV7	2	5(1:4)	7
	IGLV8	0	1(0:1)	1
	IGLV9	0	2(0:2)	2
	IGLV10	1	2(0:2)	3
	IGLV11	1	0	1
	IGLV(I)	0	12(0:12)	12
	IGLV(II)	0	3(0:3)	3
	IGLV(III)	0	1(0:1)	1
	IGLV(IV)	0	6(0:6)	6
	IGLV(VI)	0	3(0:3)	3
	IGLV(VII)	0	3(0:3)	3
Total		32	81	113

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.

Bornean orangutan (Pongo pygmaeus) IGLJ genes

The Bornean orangutan (Pongo pygmaeus) IGL locus on comprises 7 IGLJ genes :

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Total
IGLJ	IGLJ1	1	0	1
	IGLJ2	1	0	1
	IGLJ3	1	0	1
	IGLJ4	0	1	1
	IGLJ5	0	1	1
	IGLJ6	1	0	1
	IGLJ7	1	0	1
Total		5	2	7

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.

More information:
Gene table: Bornean orangutan (Pongo pygmaeus) IGLV
Gene table: Bornean orangutan (Pongo pygmaeus) IGLJ
Locus description: Bornean orangutan (Pongo pygmaeus) IGL