Bornean orangutan (Pongo pygmaeus) TRBV genes
The Bornean orangutan (
Pongo pygmaeus) TRB locus on chromosome 6 comprises 80 TRBV genes belonging to 33 TRBV subgroups :
The TRBV genes are localized in 2 V-CLUSTER:
- the 5' V-CLUSTER, classically in 5' of the TRBD, TRBJ and TRBC, includes 79 TRBV genes belonging to 32 subgroups.
- the 3' V-CLUSTER, downstream of the TRBC in inverted orientation, includes 1 TRBV gene.
| IMGT group |
IMGT set or subgroup (if any) |
Functional |
ORF |
Pseudogene |
Total |
| TRBV |
TRBV1 |
0 |
0 |
4(3:1) |
4 |
| TRBV2 |
4 |
0 |
0 |
4 |
| TRBV3 |
2 |
0 |
1(0:1) |
3 |
| TRBV4 |
3 |
0 |
1(1:0) |
4 |
| TRBV5 |
7 |
1 |
1(0:1) |
9 |
| TRBV6 |
4 |
3 |
2(2:0) |
9 |
| TRBV7 |
7 |
1 |
2(1:1) |
10 |
| TRBV8 |
0 |
0 |
2(0:2) |
2 |
| TRBV9 |
1 |
0 |
0 |
1 |
| TRBV10 |
1 |
2 |
0 |
3 |
| TRBV11 |
1 |
1 |
1(0:1) |
3 |
| TRBV12 |
4 |
2 |
1(1:0) |
7 |
| TRBV13 |
1 |
0 |
0 |
1 |
| TRBV14 |
1 |
0 |
0 |
1 |
| TRBV15 |
1 |
0 |
0 |
1 |
| TRBV16 |
1 |
0 |
0 |
1 |
| TRBV17 |
0 |
0 |
1(1:0) |
1 |
| TRBV18 |
1 |
0 |
0 |
1 |
| TRBV19 |
1 |
0 |
0 |
1 |
| TRBV20 |
1 |
0 |
0 |
1 |
| TRBV21 |
0 |
0 |
1(1:0) |
1 |
| TRBV22 |
0 |
0 |
1(0:1) |
1 |
| TRBV23 |
0 |
0 |
1(1:0) |
1 |
| TRBV24 |
1 |
0 |
0 |
1 |
| TRBV25 |
0 |
1 |
0 |
1 |
| TRBV26 |
0 |
0 |
1(1:0) |
1 |
| TRBV27 |
1 |
0 |
0 |
1 |
| TRBV28 |
1 |
0 |
0 |
1 |
| TRBV29 |
1 |
0 |
0 |
1 |
| TRBV30 |
1 |
0 |
0 |
1 |
| TRBVA |
0 |
0 |
1(0:1) |
1 |
| TRBVB |
0 |
0 |
1(0:1) |
1 |
| TRBVC |
0 |
0 |
1(0:1) |
1 |
| Total |
46 |
11 |
23 |
80 |
In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown
separated by two dots, between parentheses.
Bornean orangutan (Pongo pygmaeus) TRBD genes
The Bornean orangutan (
Pongo pygmaeus) TRB locus on chromosome 6 comprises 2 TRBD genes belonging to 2 TRBD sets:
| IMGT group |
IMGT set or subgroup (if any) |
Functional |
ORF |
Pseudogene |
Total |
| TRBD |
TRBD1 |
1 |
0 |
0 |
1 |
| TRBD2 |
1 |
0 |
0 |
1 |
| Total |
2 |
0 |
0 |
2 |
Bornean orangutan (Pongo pygmaeus) TRBJ genes
The Bornean orangutan (
Pongo pygmaeus) TRB locus on chromosome 6 comprises 14 TRBJ genes belonging to 2 sets:
| IMGT group |
IMGT set or subgroup (if any) |
Functional |
ORF |
Pseudogene |
Total |
| TRBJ |
TRBJ1 |
5 |
0 |
1(1:0) |
6 |
| TRBJ2 |
7 |
1 |
0 |
8 |
| Total |
12 |
1 |
1(1:0) |
14 |
More information:
Gene table: Bornean orangutan (Pongo pygmaeus) TRBV
Gene table: Bornean orangutan (Pongo pygmaeus) TRBD
Gene table: Bornean orangutan (Pongo pygmaeus) TRBJ
Gene table: Bornean orangutan (Pongo pygmaeus) TRBC
Locus description: Bornean orangutan (Pongo pygmaeus) TRB