IMGT Repertoire (IG and TR)
Potential germline repertoire: Mouse (Mus musculus) TRAV and TRAJ on chromosome 14
Mouse (Mus musculus) TRAV genes
The Mouse (Mus musculus) TRA locus on chromosome 14 comprises 132 TRAV genes belonging to 23 TRAV set:- 95 FUNCTIONAL
- 1 ORF (Open Reading Frame)
- 20 PSEUDOGENE
- 7 FUNCTIONAL or PSEUDOGENE
- 9 FUNCTIONAL or ORF
For Correspondence between the different gene nomenclatures: Mouse (Mus musculus) TRAV, click here
| IMGT Group | IMGT Subgroup | Functional | ORF | Pseudogene | Total |
|---|---|---|---|---|---|
| TRAV | TRAV1 | 1 | 0 | 0 | 1 |
| TRAV2 | 1 | 0 | 0 | 1 | |
| TRAV3 | 5 | 0 | 3 (0:3) | 8 | |
| TRAV4 | 5 (+ 2)* | 0 (+ 2)* | 2 (1:1) | 9 | |
| TRAV5 | 3 (+ 1)* | 0 (+ 1)* | 5-6** (3:3) | 11 | |
| TRAV6 | 14 (+ 1)* | 0 | 0 (+1 (0:1))* | 15 | |
| TRAV7 | 14 | 0 | 0 | 14 | |
| TRAV8 | 4 (+ 1)* | 0 | 0 (+1 (1:0))* | 5 | |
| TRAV9 | 8-9** (+ 2)* | 0 | 1 (0:1) (+2 (0:2))* | 13 | |
| TRAV10 | 1 (+ 2)* | 0 | 0 (+2 (2:0))* | 3 | |
| TRAV11 | 1 (+ 1)* | 0 (+ 1)* | 1 (1:0) | 3 | |
| TRAV12 | 7 (+ 2)* | 0 (+ 2)* | 1 (0:1) | 10 | |
| TRAV13 | 12 (+ 1)* | 0 (+ 1)* | 0 | 13 | |
| TRAV14 | 8 (+ 1)* | 0 (+ 1)* | 0 | 9 | |
| TRAV15 | 6 | 0 | 3 (0:3) | 9 | |
| TRAV16 | 3 | 0 | 0 | 3 | |
| TRAV17 | 1 | 0 | 0 | 1 | |
| TRAV18 | 0 | 1 | 0 | 1 | |
| TRAV19 | 0 (+ 1)* | 0 | 0 (+1 (0:1))* | 1 | |
| TRAV20 | 0 | 0 | 1 (1:0) | 1 | |
| TRAV21 | 0 (+ 1)* | 0 (+ 1)* | 0 | 1 | |
| TRAV22 | 0 | 0 | 1 (0:1) | 1 | |
| TRAV23 | 0 | 0 | 1 (0:1) | 1 | |
| Total | 95 (+ 16) | 1 (+ 9) | 20 (+ 7) | 132 | |
* An asterisk indicates that the following genes have alleles with different functionalities:
FUNCTIONAL or PSEUDOGENE (TRAV6-7/DV9, TRAV8-2, TRAV9D-2, TRAV9D-4, TRAV10D, TRAV10, TRAV10D, TRAV19)
FUNCTIONAL or ORF (TRAV4D-3, TRAV4D-4, TRAV5D-4, TRAV11D, TRAV12-1, TRAV12D-3, TRAV13-3, TRAV14D-1, TRAV21/DV12)
** Two asterisks indicate allelic polymorphisms by insertion/deletion which concern:
- an deletion of 2 genes between TRAV12-2 and TRAV12-3 (TRAV9-3 and TRAV5-3)
Mouse (Mus musculus) TRAJ genes
The Mouse (Mus musculus) TRA locus on chromosome 14 comprises 61 TRAV genes:- 39 FUNCTIONAL
- 6 ORF (Open Reading Frame)
- 12 PSEUDOGENE
- 1 FUNCTIONAL or PSEUDOGENE
- 1 FUNCTIONAL or ORF
- 1 PSEUDOGENE in-frame or out-of-frame
| IMGT Group | IMGT Subgroup | Functional | ORF | Pseudogene | Total |
|---|---|---|---|---|---|
| TRAJ | TRAJ1 | 0 | 0 | 1 (0:1) | 1 |
| TRAJ2 | 1 | 0 | 0 | 1 | |
| TRAJ3 | 0 | 0 | 1 (1:0) | 1 | |
| TRAJ4 | 0 (+ 1)* | 0 | 0 (+1 (1:0))* | 1 | |
| TRAJ5 | 1 | 0 | 0 | 1 | |
| TRAJ6 | 1 | 0 | 0 | 1 | |
| TRAJ7 | 0 | 1 | 0 | 1 | |
| TRAJ8 | 0 | 0 | 1 (0:1) | 1 | |
| TRAJ9 | 1 | 0 | 0 | 1 | |
| TRAJ11 | 1 | 0 | 0 | 1 | |
| TRAJ12 | 1 | 0 | 0 | 1 | |
| TRAJ13 | 1 | 0 | 0 | 1 | |
| TRAJ14 | 0 | 0 | 1 (0:1) | 1 | |
| TRAJ15 | 1 | 0 | 0 | 1 | |
| TRAJ16 | 1 | 0 | 0 | 1 | |
| TRAJ17 | 1 | 0 | 0 | 1 | |
| TRAJ18 | 1 | 0 | 0 | 1 | |
| TRAJ19 | 0 | 1 | 0 | 1 | |
| TRAJ20 | 0 | 0 | 1 (1:0) | 1 | |
| TRAJ21 | 1 | 0 | 0 | 1 | |
| TRAJ22 | 1 | 0 | 0 | 1 | |
| TRAJ23 | 1 | 0 | 0 | 1 | |
| TRAJ24 | 1 | 0 | 0 | 1 | |
| TRAJ25 | 0 | 1 | 0 | 1 | |
| TRAJ26 | 1 | 0 | 0 | 1 | |
| TRAJ27 | 1 | 0 | 0 | 1 | |
| TRAJ28 | 1 | 0 | 0 | 1 | |
| TRAJ29 | 0 | 1 | 0 | 1 | |
| TRAJ30 | 1 | 0 | 0 | 1 | |
| TRAJ31 | 1 | 0 | 0 | 1 | |
| TRAJ32 | 1 | 0 | 0 | 1 | |
| TRAJ33 | 1 | 0 | 0 | 1 | |
| TRAJ34 | 1 | 0 | 0 | 1 | |
| TRAJ35 | 1 | 0 | 0 | 1 | |
| TRAJ36 | 0 | 0 | 1 (1:0) | 1 | |
| TRAJ37 | 1 | 0 | 0 | 1 | |
| TRAJ38 | 1 | 0 | 0 | 1 | |
| TRAJ39 | 1 | 0 | 0 | 1 | |
| TRAJ40 | 1 | 0 | 0 | 1 | |
| TRAJ41 | 0 | 1 | 0 | 1 | |
| TRAJ42 | 1 | 0 | 0 | 1 | |
| TRAJ43 | 1 | 0 | 0 | 1 | |
| TRAJ44 | 0 | 1 | 0 | 1 | |
| TRAJ45 | 1 | 0 | 0 | 1 | |
| TRAJ46 | 0 | 0 | 0 (+2 (1:1))* | 1 | |
| TRAJ47 | 0 (+ 1)* | 0 (+ 1)* | 0 | 1 | |
| TRAJ48 | 1 | 0 | 0 | 1 | |
| TRAJ49 | 1 | 0 | 0 | 1 | |
| TRAJ50 | 1 | 0 | 0 | 1 | |
| TRAJ51 | 0 | 0 | 1 (0:1) | 1 | |
| TRAJ52 | 1 | 0 | 0 | 1 | |
| TRAJ53 | 1 | 0 | 0 | 1 | |
| TRAJ54 | 0 | 0 | 1 (1:0) | 1 | |
| TRAJ55 | 0 | 0 | 1 (0:1) | 1 | |
| TRAJ56 | 1 | 0 | 0 | 1 | |
| TRAJ57 | 1 | 0 | 0 | 1 | |
| TRAJ58 | 1 | 0 | 0 | 1 | |
| TRAJ59 | 0 | 0 | 1 (1:0) | 1 | |
| TRAJ60 | 0 | 0 | 2 (2:0) | 2 | |
| Total | 39 (+ 2) | 6 (+ 1) | 12 (+ 3) | 60 | |
In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.
* An asterisk indicates that the following genes have alleles with different functionalities:
FUNCTIONAL or PSEUDOGENE (TRAJ4)
PSEUDOGENE in-frame or out-of-frame (TRAJ46)
FUNCTIONAL or ORF (TRAJ47)
More information:
Gene
table: Mouse (Mus musculus) TRAV
Gene
table: Mouse (Mus musculus) TRAJ
Locus
description: Mouse (Mus musculus) TRA
Potential
germline repertoire: Rhesus monkey (Macaca mulatta) TRD
