Mouse (Mus musculus) TRAV genes

The Mouse (Mus musculus) TRA locus on chromosome 14 comprises 132 TRAV genes belonging to 23 TRAV set: For Number of germline genes and potential repertoire: Mouse (Mus musculus) TRDV, click here

For Correspondence between the different gene nomenclatures: Mouse (Mus musculus) TRAV, click here

IMGT Group IMGT Subgroup Functional ORF Pseudogene Total
TRAV TRAV1 1 0 0 1
TRAV2 1 0 0 1
TRAV3 5 0 3 (0:3) 8
TRAV4 5 (+ 2)* 0 (+ 2)* 2 (1:1) 9
TRAV5 3 (+ 1)* 0 (+ 1)* 5-6** (3:3) 11
TRAV6 14 (+ 1)* 0 0 (+1 (0:1))* 15
TRAV7 14 0 0 14
TRAV8 4 (+ 1)* 0 0 (+1 (1:0))* 5
TRAV9 8-9** (+ 2)* 0 1 (0:1) (+2 (0:2))* 13
TRAV10 1 (+ 2)* 0 0 (+2 (2:0))* 3
TRAV11 1 (+ 1)* 0 (+ 1)* 1 (1:0) 3
TRAV12 7 (+ 2)* 0 (+ 2)* 1 (0:1) 10
TRAV13 12 (+ 1)* 0 (+ 1)* 0 13
TRAV14 8 (+ 1)* 0 (+ 1)* 0 9
TRAV15 6 0 3 (0:3) 9
TRAV16 3 0 0 3
TRAV17 1 0 0 1
TRAV18 0 1 0 1
TRAV19 0 (+ 1)* 0 0 (+1 (0:1))* 1
TRAV20 0 0 1 (1:0) 1
TRAV21 0 (+ 1)* 0 (+ 1)* 0 1
TRAV22 0 0 1 (0:1) 1
TRAV23 0 0 1 (0:1) 1
Total 95 (+ 16) 1 (+ 9) 20 (+ 7) 132
In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.
* An asterisk indicates that the following genes have alleles with different functionalities:
FUNCTIONAL or PSEUDOGENE (TRAV6-7/DV9, TRAV8-2, TRAV9D-2, TRAV9D-4, TRAV10D, TRAV10, TRAV10D, TRAV19)
FUNCTIONAL or ORF (TRAV4D-3, TRAV4D-4, TRAV5D-4, TRAV11D, TRAV12-1, TRAV12D-3, TRAV13-3, TRAV14D-1, TRAV21/DV12)
** Two asterisks indicate allelic polymorphisms by insertion/deletion which concern:
- an deletion of 2 genes between TRAV12-2 and TRAV12-3 (TRAV9-3 and TRAV5-3)

Mouse (Mus musculus) TRAJ genes

The Mouse (Mus musculus) TRA locus on chromosome 14 comprises 61 TRAV genes:
IMGT Group IMGT Subgroup Functional ORF Pseudogene Total
TRAJ TRAJ1 0 0 1 (0:1) 1
TRAJ2 1 0 0 1
TRAJ3 0 0 1 (1:0) 1
TRAJ4 0 (+ 1)* 0 0 (+1 (1:0))* 1
TRAJ5 1 0 0 1
TRAJ6 1 0 0 1
TRAJ7 0 1 0 1
TRAJ8 0 0 1 (0:1) 1
TRAJ9 1 0 0 1
TRAJ11 1 0 0 1
TRAJ12 1 0 0 1
TRAJ13 1 0 0 1
TRAJ14 0 0 1 (0:1) 1
TRAJ15 1 0 0 1
TRAJ16 1 0 0 1
TRAJ17 1 0 0 1
TRAJ18 1 0 0 1
TRAJ19 0 1 0 1
TRAJ20 0 0 1 (1:0) 1
TRAJ21 1 0 0 1
TRAJ22 1 0 0 1
TRAJ23 1 0 0 1
TRAJ24 1 0 0 1
TRAJ25 0 1 0 1
TRAJ26 1 0 0 1
TRAJ27 1 0 0 1
TRAJ28 1 0 0 1
TRAJ29 0 1 0 1
TRAJ30 1 0 0 1
TRAJ31 1 0 0 1
TRAJ32 1 0 0 1
TRAJ33 1 0 0 1
TRAJ34 1 0 0 1
TRAJ35 1 0 0 1
TRAJ36 0 0 1 (1:0) 1
TRAJ37 1 0 0 1
TRAJ38 1 0 0 1
TRAJ39 1 0 0 1
TRAJ40 1 0 0 1
TRAJ41 0 1 0 1
TRAJ42 1 0 0 1
TRAJ43 1 0 0 1
TRAJ44 0 1 0 1
TRAJ45 1 0 0 1
TRAJ46 0 0 0 (+2 (1:1))* 1
TRAJ47 0 (+ 1)* 0 (+ 1)* 0 1
TRAJ48 1 0 0 1
TRAJ49 1 0 0 1
TRAJ50 1 0 0 1
TRAJ51 0 0 1 (0:1) 1
TRAJ52 1 0 0 1
TRAJ53 1 0 0 1
TRAJ54 0 0 1 (1:0) 1
TRAJ55 0 0 1 (0:1) 1
TRAJ56 1 0 0 1
TRAJ57 1 0 0 1
TRAJ58 1 0 0 1
TRAJ59 0 0 1 (1:0) 1
TRAJ60 0 0 2 (2:0) 2
Total 39 (+ 2) 6 (+ 1) 12 (+ 3) 60

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.
* An asterisk indicates that the following genes have alleles with different functionalities:
FUNCTIONAL or PSEUDOGENE (TRAJ4)
PSEUDOGENE in-frame or out-of-frame (TRAJ46)
FUNCTIONAL or ORF (TRAJ47)

More information:
Gene table: Mouse (Mus musculus) TRAV
Gene table: Mouse (Mus musculus) TRAJ
Locus description: Mouse (Mus musculus) TRA
Potential germline repertoire: Rhesus monkey (Macaca mulatta) TRD