IMGT Repertoire (IG and TR)

Potential germline repertoire: Sumatran orangutan (Pongo abelii) TRAV and TRAJ genes on chromosome 15

For a comparative repertoire between different assemblies' annotations, see: Sumatran orangutan (Pongo abelii) TRA locus gene repertoire per assembly.

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Sumatran orangutan (Pongo abelii) TRAV genes

The Sumatran orangutan (Pongo abelii) TRA locus on chromosome 15 comprises 63 TRAV genes belonging to 46 TRAV subgroups:

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Pseudogene	Total
TRAV	TRAV1	2	0	0	2
	TRAV2	0	0	1	1
	TRAV3	1	0	0	1
	TRAV4	0	1	0	1
	TRAV5	1	0	0	1
	TRAV6	1	0	0	1
	TRAV7	1	0	0	1
	TRAV8	5	0	4 (1:3)	9
	TRAV9	2	0	0	2
	TRAV10	1	0	0	1
	TRAV11	0	1	1 (1:0)	2
	TRAV12	3	0	0	3
	TRAV13	2	0	0	2
	TRAV14	1	0	1 (0:1)	2
	TRAV15	0	0	1 (0:1)	1
	TRAV16	1	0	0	1
	TRAV17	1	0	0	1
	TRAV18	1	0	0	1
	TRAV19	1	0	0	1
	TRAV20	0	0	1 (0:1)	1
	TRAV21	1	0	0	1
	TRAV22	1	0	0	1
	TRAV23	1	0	0	1
	TRAV24	0	0	1 (1:0)	1
	TRAV25	1	0	0	1
	TRAV26	2	0	0	2
	TRAV27	1	0	0	1
	TRAV28	0	0	1 (0:1)	1
	TRAV29	1	0	0	1
	TRAV30	1	0	0	1
	TRAV31	0	0	1 (1:0)	1
	TRAV32	0	0	1 (0:1)	1
	TRAV33	0	0	1 (0:1)	1
	TRAV34	1	0	0	1
	TRAV35	1	0	0	1
	TRAV36	1	0	0	1
	TRAV37	0	0	1 (0:1)	1
	TRAV38	2	0	0	2
	TRAV39	1	0	0	1
	TRAV40	1	0	0	1
	TRAV41	1	0	0	1
	TRAV46	0	0	1 (0:1)	1
	TRAVA	0	0	1 (0:1)	1
	TRAVB	0	0	1 (0:1)	1
	TRAVC	0	0	1 (0:1)	1
	TRAVD	0	0	1 (0:1)	1
Total		41	2	20	63

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.

Sumatran orangutan (Pongo abelii) TRAJ genes

The Sumatran orangutan (Pongo abelii) TRA locus on chromosome 15 comprises 61 TRAJ genes:

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Pseudogene	Total
TRAJ	TRAJ1	0	0	1 (1:0)	1
	TRAJ2	1	0	0	1
	TRAJ3	1	0	0	1
	TRAJ4	1	0	0	1
	TRAJ5	1	0	0	1
	TRAJ6	1	0	0	1
	TRAJ7	1	0	0	1
	TRAJ8	1	0	0	1
	TRAJ9	1	0	0	1
	TRAJ10	1	0	0	1
	TRAJ11	1	0	0	1
	TRAJ12	1	0	0	1
	TRAJ13	1	0	0	1
	TRAJ14	1	0	0	1
	TRAJ15	1	0	0	1
	TRAJ16	0	1	0	1
	TRAJ17	1	0	0	1
	TRAJ18	1	0	0	1
	TRAJ19	0	1	0	1
	TRAJ20	1	0	0	1
	TRAJ21	1	0	0	1
	TRAJ22	1	0	0	1
	TRAJ23	1	0	0	1
	TRAJ24	1	0	0	1
	TRAJ25	1	0	0	1
	TRAJ26	1	0	0	1
	TRAJ27	1	0	0	1
	TRAJ28	1	0	0	1
	TRAJ29	1	0	0	1
	TRAJ30	1	0	0	1
	TRAJ31	1	0	0	1
	TRAJ32	1	0	0	1
	TRAJ33	1	0	0	1
	TRAJ34	1	0	0	1
	TRAJ35	1	0	0	1
	TRAJ36	1	0	0	1
	TRAJ37	1	0	0	1
	TRAJ38	1	0	0	1
	TRAJ39	1	0	0	1
	TRAJ40	1	0	0	1
	TRAJ41	1	0	0	1
	TRAJ42	1	0	0	1
	TRAJ43	1	0	0	1
	TRAJ44	1	0	0	1
	TRAJ45	0	0	1 (0:1)	1
	TRAJ46	1	0	0	1
	TRAJ47	1	0	0	1
	TRAJ48	1	0	0	1
	TRAJ49	1	0	0	1
	TRAJ50	1	0	0	1
	TRAJ51	0	0	1 (1:0)	1
	TRAJ52	1	0	0	1
	TRAJ53	1	0	0	1
	TRAJ54	1	0	0	1
	TRAJ55	0	0	1 (1:0)	1
	TRAJ56	1	0	0	1
	TRAJ57	0	1	0	1
	TRAJ58	1	0	0	1
	TRAJ59	0	1	0	1
	TRAJ60	0	0	1 (1:0)	1
	TRAJ61	0	0	1 (0:1)	1
Total		51	4	6	61

More information:
Gene table: Sumatran orangutan (Pongo abelii) TRAV
Gene table: Sumatran orangutan (Pongo abelii) TRAJ
Gene table: Sumatran orangutan (Pongo abelii) TRAC
Locus description: Sumatran orangutan (Pongo abelii) TRA
Potential germline repertoire: Sumatran orangutan (Pongo abelii) TRD