IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV13-1, TRAV13D-1 and TRAV13N-1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
Dots indicate gaps according to the IMGT unique numbering.
Blanks at the 5' and/or 3' end indicate partial sequences.
Asterisk (*) in the sequence indicate a STOP-CODON.
Letters in red correspond to amino acids which are polymorphic in the other alleles.
Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
                                                                                                                                
                                                
                                                 1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                                 G   Q   Q   V   Q   Q   S   P       A   S   L   V   L   Q   E   G   E   N   A  
  AC004406   TRAV13-1*01  F   V-REGION gDNA     gga cag caa gtg cag cag agc ccc ... gcg tcc ttg gtt ctg cag gag ggg gag aat gca 

                                                                                                                                
  AE007512   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  AE008685   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  AC005402   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --t ... --a --- --- --- --- --- --- --- --- --c --- 

                                                                                                                                
  AE007512   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --t ... --a --- --- --- --- --- --- --- --- --c --- 

                                                                                                                                
  AE008684   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --t ... --a --- --- --- --- --- --- --- --- --c --- 

                                                                                     T                                          
  AC188458   TRAV13N-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --t --- ... a-- --- --- --- --- --- --- --- --a --c --- 

                                                                                     T                                          
  IMGT000082 TRAV13N-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --t --- ... a-- --- --- --- --- --- --- --- --a --c --- 

                                                                                                                                
  IMGT000082 TRAV13-1*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --c --- 

                                                                                                                                
  M20875     TRAV13D-1*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --c --- 

                                                                                                                                
  M34216     TRAV13D-1*03 (F) V-REGION cDNA                                                                                     

                                                                                     T                                          
  IMGT000082 TRAV13D-1*04 F   V-REGION gDNA     --- --- --- --- --- --- --t --- ... a-- --- --- --- --- --- --- --- --a --c --- 



                                                                            ___________________CDR1-IMGT____________________    
                                                
                                                 20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                                 E   L   Q   C   N   F   S   T   S   L                               N   S   M  
  AC004406   TRAV13-1*01  F   V-REGION gDNA     gag ctg cag tgt aac ttt tcc aca tct ttg ... ... ... ... ... ... ... aac agt atg 

                                                                                                                                
  AE007512   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  AE008685   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  AC005402   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  AE007512   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  AE008684   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  AC188458   TRAV13N-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  IMGT000082 TRAV13N-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  IMGT000082 TRAV13-1*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  M20875     TRAV13D-1*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  M34216     TRAV13D-1*03 (F) V-REGION cDNA                                                                                 --- 

                                                                                                                                
  IMGT000082 TRAV13D-1*04 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 



                                                                                                                _______________C
                                                
                                                 40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                 Q   W   F   Y   Q   R   P   E   G   S   L   V   S   L   F   Y   N   P   S      
  AC004406   TRAV13-1*01  F   V-REGION gDNA     cag tgg ttt tac caa cgt cct gag gga agt ctc gtc agc ctg ttc tac aat cct tct ... 

                                                                                                                                
  AE007512   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                                                                
  AE008685   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                             G                                                  
  AC005402   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- -g- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                             G                                                  
  AE007512   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- -g- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                             G                                                  
  AE008684   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- -g- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                             G               I       V                          
  AC188458   TRAV13N-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- -g- --- --- --- a-- --- g-- --- --- --- --- --- ... 

                                                                             G               I       V                          
  IMGT000082 TRAV13N-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- -g- --- --- --- a-- --- g-- --- --- --- --- --- ... 

                                                                             G                                                  
  IMGT000082 TRAV13-1*02  F   V-REGION gDNA     --- --- --- --- --- --- --- -g- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                             G                                                  
  M20875     TRAV13D-1*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- -g- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                             G                                                  
  M34216     TRAV13D-1*03 (F) V-REGION cDNA     --- --- --- --t --- --- --- -g- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                             G                       V                          
  IMGT000082 TRAV13D-1*04 F   V-REGION gDNA     --- --- --- --- --- --- --- -g- --- --- --- --- --- g-- --- --- --- --- --- ... 



                                                DR2-IMGT________________                                                        
                                                
                                                 60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                                 G   T   K   Q   S                       G   R   L   T   S   T  
  AC004406   TRAV13-1*01  F   V-REGION gDNA     ... ... ... ... ggg aca aag cag agt ... ... ... ... ... ggg aga ctg aca tcc aca 

                                                                                                                                
  AE007512   TRAV13-1*01  F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                
  AE008685   TRAV13-1*01  F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                
  AC005402   TRAV13D-1*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --t 

                                                                                                                                
  AE007512   TRAV13D-1*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --t 

                                                                                                                                
  AE008684   TRAV13D-1*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --t 

                                                                                                                                
  AC188458   TRAV13N-1*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                
  IMGT000082 TRAV13N-1*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                             H                                                  
  IMGT000082 TRAV13-1*02  F   V-REGION gDNA     ... ... ... ... --- --- --- --t --- ... ... ... ... ... --- --- --- --- --- --t 

                                                                             H                                                  
  M20875     TRAV13D-1*02 (F) V-REGION cDNA     ... ... ... ... --- --- --- --t --- ... ... ... ... ... --- --- --- --- --- --t 

                                                                                                                                
  M34216     TRAV13D-1*03 (F) V-REGION cDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --t 

                                                                                                                                
  IMGT000082 TRAV13D-1*04 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 



                                                                                                                                
                                                
                                                 80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                                 T   V   I   K   E       R   R   S   S   L   H   I   S   S   S   Q   I   T   D  
  AC004406   TRAV13-1*01  F   V-REGION gDNA     aca gtc atc aaa gaa ... cgt cgc agc tct ttg cac att tcc tcc tcc cag atc aca gac 

                                                                                                                                
  AE007512   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  AE008685   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                     T          
  AC005402   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- -ca --- --- 

                                                                                                                     T          
  AE007512   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- -ca --- --- 

                                                                                                                     T          
  AE008684   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- -ca --- --- 

                                                                                                                                
  AC188458   TRAV13N-1*01 F   V-REGION gDNA     --- --- --t --- --- ... --c --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  IMGT000082 TRAV13N-1*01 F   V-REGION gDNA     --- --- --t --- --- ... --c --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                     T          
  IMGT000082 TRAV13-1*02  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- -ca --- --- 

                                                                                                                     T          
  M20875     TRAV13D-1*02 (F) V-REGION cDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- -ca --- --- 

                                                                                                                     T          
  M34216     TRAV13D-1*03 (F) V-REGION cDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- -ca --- --- 

                                                                                                                                
  IMGT000082 TRAV13D-1*04 F   V-REGION gDNA     --- --- --t --- --- ... --c --- --- --- --- --- --- --- --- --- --- --- --- --- 



                                                                        ___CDR3-IMGT____
                                                
                                                 99 100 101 102 103 104 105 106 107 
                                                 S   G   T   Y   L   C   A   M   E  
  AC004406   TRAV13-1*01  F   V-REGION gDNA     tca ggc act tat ctc tgt gct atg gaa c

                                                                                    
  AE007512   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  AE008685   TRAV13-1*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  AC005402   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  AE007512   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  AE008684   TRAV13D-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  AC188458   TRAV13N-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  IMGT000082 TRAV13N-1*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                             L      
  IMGT000082 TRAV13-1*02  F   V-REGION gDNA     --- --- --- --- --- --- --- t-- --- -

                                                                            
  M20875     TRAV13D-1*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- 

                                                                                
  M34216     TRAV13D-1*03 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- -

                                                                                    
  IMGT000082 TRAV13D-1*04 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
Created:: 05/09/2022
Last updated:: 22/09/2023
Authors:: Guilhem Zeitoun