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Alignment of alleles: house mouse (Mus musculus) TRAV13-5

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.

Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.


                                                                                                                             
                                             
                                              1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                              G   Q   Q   V   Q   Q   S   P       A   S   L   V   L   Q   E   G   E   N   A  
  AC005938   TRAV13-5*01 F V-REGION gDNA     ggt cag caa gtg cag cag agt ccc ... gcg tcc ttg gtt ctg cag gag ggg gag aac gca 

                                                                                                                             
  AE007512   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE008686   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 



                                                                         ___________________CDR1-IMGT____________________    
                                             
                                              20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                              E   L   Q   C   S   F   S   I   S   T                               N   Q   V  
  AC005938   TRAV13-5*01 F V-REGION gDNA     gag ctg cag tgt agc ttt tcc atc tct aca ... ... ... ... ... ... ... aac cag gtg 

                                                                                                                             
  AE007512   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                             
  AE008686   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                             
  IMGT000082 TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 



                                                                                                             _______________C
                                             
                                              40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                              Q   W   F   Y   Q   R   P   G   G   R   L   I   G   L   S   Y   I   P          
  AC005938   TRAV13-5*01 F V-REGION gDNA     cag tgg ttt tac caa cgt cct ggg gga cgc ctc atc ggc ctg tcc tac att cct ... ... 

                                                                                                                             
  AE007512   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... 

                                                                                                                             
  AE008686   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... 

                                                                                                                             
  IMGT000082 TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... 



                                             DR2-IMGT________________                                                        
                                             
                                              60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                              G   M   K   P   T                       G   K   Q   T   S   S  
  AC005938   TRAV13-5*01 F V-REGION gDNA     ... ... ... ... gga atg aag cct act ... ... ... ... ... gga aaa cag aca tcc tca 

                                                                                                                             
  AE007512   TRAV13-5*01 F V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  AE008686   TRAV13-5*01 F V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV13-5*01 F V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 



                                                                                                                             
                                             
                                              80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                              T   V   T   K   G       R   H   S   S   L   T   I   S   S   S   Q   T   T   D  
  AC005938   TRAV13-5*01 F V-REGION gDNA     aca gtc act aag gga ... cgt cac agc tct ttg act ata tcc tcc tcc cag acc aca gac 

                                                                                                                             
  AE007512   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE008686   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 



                                                                     ___CDR3-IMGT____
                                             
                                              99 100 101 102 103 104 105 106 107 
                                              S   G   T   Y   F   C   V   L   S  
  AC005938   TRAV13-5*01 F V-REGION gDNA     tca ggc act tat ttc tgt gtt ctg agt a

                                                                                 
  AE007512   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                 
  AE008686   TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                 
  IMGT000082 TRAV13-5*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -


This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).

Created:
05/09/2022
Last updated:
22/09/2023
Authors:
Guilhem Zeitoun