IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV13D-4 and TRAV13N-4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
Dots indicate gaps according to the IMGT unique numbering.
Blanks at the 5' and/or 3' end indicate partial sequences.
Asterisk (*) in the sequence indicate a STOP-CODON.
Letters in red correspond to amino acids which are polymorphic in the other alleles.
Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
                                                                                                                                
                                                
                                                 1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                                 E   Q   Q   V   Q   Q   S   P       A   S   L   V   L   Q   E   G   E   N   A  
  AC005855   TRAV13D-4*01 F   V-REGION gDNA     gaa cag caa gtg cag cag agt ccc ... gca tcc ttg gtt ctg cag gag ggg gag aac gca 

                                                                                                                                
  AC004407   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  AE007512   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  AE008684   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                 A              
  AC161460   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- -c- --- --- --- 

                                                                                                                 A              
  AC122813   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- -c- --- --- --- 

                                                                                                                 A              
  IMGT000082 TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- -c- --- --- --- 

                                                                                                                 A              
  M20876     TRAV13D-4*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- ... --g --- --- --- --- --- --- -c- --- --- --- 

                                                 G                                                                              
  AC163653   TRAV13D-4*03 F   V-REGION gDNA     -g- --- --- --- --- --- --- --t ... --- --- --- --- --- --- --- --- --- --- --- 

                                                 G                                                                              
  AC188458   TRAV13D-4*03 F   V-REGION gDNA     -g- --- --- --- --- --- --- --t ... --- --- --- --- --- --- --- --- --- --- --- 

                                                 G                                                                              
  IMGT000082 TRAV13D-4*03 F   V-REGION gDNA     -g- --- --- --- --- --- --- --t ... --- --- --- --- --- --- --- --- --- --- --- 



                                                                            ___________________CDR1-IMGT____________________    
                                                
                                                 20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                                 E   L   Q   C   S   F   S   I   F   T                               N   Q   V  
  AC005855   TRAV13D-4*01 F   V-REGION gDNA     gag ctc cag tgt agc ttt tcc atc ttt aca ... ... ... ... ... ... ... aac cag gtg 

                                                                                                                                
  AC004407   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  AE007512   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  AE008684   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  AC161460   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  AC122813   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  IMGT000082 TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                                                                                
  M20876     TRAV13D-4*02 (F) V-REGION cDNA     --- --g --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- 

                                                                 N           S   T   A                               T   R   L  
  AC163653   TRAV13D-4*03 F   V-REGION gDNA     --- --g --- --- -a- --- --- tc- aca g-- ... ... ... ... ... ... ... -c- -g- c-- 

                                                                 N           S   T   A                               T   R   L  
  AC188458   TRAV13D-4*03 F   V-REGION gDNA     --- --g --- --- -a- --- --- tc- aca g-- ... ... ... ... ... ... ... -c- -g- c-- 

                                                                 N           S   T   A                               T   R   L  
  IMGT000082 TRAV13D-4*03 F   V-REGION gDNA     --- --g --- --- -a- --- --- tc- aca g-- ... ... ... ... ... ... ... -c- -g- c-- 



                                                                                                                _______________C
                                                
                                                 40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                 Q   W   F   Y   Q   R   P   G   G   R   L   V   S   L   L   Y   N   P   S      
  AC005855   TRAV13D-4*01 F   V-REGION gDNA     cag tgg ttt tac caa cgt cct ggg gga aga ctc gtc agc ctg ttg tac aat cct tct ... 

                                                                                                                                
  AC004407   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                                                                
  AE007512   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                                                                
  AE008684   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                                                                
  AC161460   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                                                                
  AC122813   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                                                                
  IMGT000082 TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                                                                
  M20876     TRAV13D-4*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                                     S                                          
  AC163653   TRAV13D-4*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --c --- --- --- --- --- --- --- --- --- ... 

                                                                                     S                                          
  AC188458   TRAV13D-4*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --c --- --- --- --- --- --- --- --- --- ... 

                                                                                     S                                          
  IMGT000082 TRAV13D-4*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --c --- --- --- --- --- --- --- --- --- ... 



                                                DR2-IMGT________________                                                        
                                                
                                                 60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                                 G   T   K   Q   S                       G   R   L   T   S   T  
  AC005855   TRAV13D-4*01 F   V-REGION gDNA     ... ... ... ... ggg aca aag cag agt ... ... ... ... ... ggg aga ctg aca tcc aca 

                                                                                                                                
  AC004407   TRAV13D-4*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                
  AE007512   TRAV13D-4*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                
  AE008684   TRAV13D-4*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                
  AC161460   TRAV13N-4*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                
  AC122813   TRAV13N-4*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                
  IMGT000082 TRAV13N-4*01 F   V-REGION gDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                
  M20876     TRAV13D-4*02 (F) V-REGION cDNA     ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --t 

                                                                             H   T                                              
  AC163653   TRAV13D-4*03 F   V-REGION gDNA     ... ... ... ... --- --- --- --c -c- ... ... ... ... ... --a --- --- --- --- --c 

                                                                             H   T                                              
  AC188458   TRAV13D-4*03 F   V-REGION gDNA     ... ... ... ... --- --- --- --c -c- ... ... ... ... ... --a --- --- --- --- --c 

                                                                             H   T                                              
  IMGT000082 TRAV13D-4*03 F   V-REGION gDNA     ... ... ... ... --- --- --- --c -c- ... ... ... ... ... --a --- --- --- --- --c 



                                                                                                                                
                                                
                                                 80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                                 T   V   I   K   E       R   R   S   S   L   H   I   S   S   S   Q   I   T   D  
  AC005855   TRAV13D-4*01 F   V-REGION gDNA     aca gtc att aaa gaa ... cgt cgc agc tct ttg cac att tcc tcc tcc cag atc aca gac 

                                                                                                                                
  AC004407   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  AE007512   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  AE008684   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  AC161460   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  AC122813   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  IMGT000082 TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                
  M20876     TRAV13D-4*02 (F) V-REGION cDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                         T                                                           T          
  AC163653   TRAV13D-4*03 F   V-REGION gDNA     --- --- -c- --- --- ... --- --- --- --- --- --- --- --- --- --- --- -ca --- --- 

                                                         T                                                           T          
  AC188458   TRAV13D-4*03 F   V-REGION gDNA     --- --- -c- --- --- ... --- --- --- --- --- --- --- --- --- --- --- -ca --- --- 

                                                         T                                                           T          
  IMGT000082 TRAV13D-4*03 F   V-REGION gDNA     --- --- -c- --- --- ... --- --- --- --- --- --- --- --- --- --- --- -ca --- --- 



                                                                        ___CDR3-IMGT____
                                                
                                                 99 100 101 102 103 104 105 106 107 
                                                 S   G   T   Y   L   C   A   M   E  
  AC005855   TRAV13D-4*01 F   V-REGION gDNA     tca ggc act tat ctc tgt gct atg gaa c

                                                                                    
  AC004407   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  AE007512   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  AE008684   TRAV13D-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  AC161460   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  AC122813   TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  IMGT000082 TRAV13N-4*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                    
  M20876     TRAV13D-4*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- -

                                                                 F                  
  AC163653   TRAV13D-4*03 F   V-REGION gDNA     --- --- --- --- t-- --- --- --- --- -

                                                                 F                  
  AC188458   TRAV13D-4*03 F   V-REGION gDNA     --- --- --- --- t-- --- --- --- --- -

                                                                 F                  
  IMGT000082 TRAV13D-4*03 F   V-REGION gDNA     --- --- --- --- t-- --- --- --- --- -
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
Created:: 05/09/2022
Last updated:: 22/09/2023
Authors:: Guilhem Zeitoun