IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV16D_DV11

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.

Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Dots indicate gaps according to the IMGT unique numbering.
Blanks at the 5' and/or 3' end indicate partial sequences.
Asterisk (*) in the sequence indicate a STOP-CODON.
Letters in red correspond to amino acids which are polymorphic in the other alleles.
Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

                                                                                                                                   
                                                   
                                                    1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                                    A   Q   K   V   T   Q   T   Q       T   S   I   S   V   M   E   K   T   T   V  
  AC005855   TRAV16D/DV11*01 F   V-REGION gDNA     gcc cag aag gta aca cag act cag ... act tca att tct gtg atg gag aag aca acg gtg 

                                                                                                                                   
  AE007512   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  AE008684   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  AC163653   TRAV16D/DV11*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  IMGT000082 TRAV16D/DV11*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  M16119     TRAV16D/DV11*03 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 



                                                                               ___________________CDR1-IMGT____________________    
                                                   
                                                    20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                                    T   M   D   C   V   Y   E   T   Q   D   S                       S   Y   F   L  
  AC005855   TRAV16D/DV11*01 F   V-REGION gDNA     aca atg gac tgt gtg tat gaa acc cag gac agt ... ... ... ... ... tct tac ttc tta 

                                                                                                                                   
  AE007512   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- 

                                                                                                                                   
  AE008684   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- 

                                                                                                                                   
  AC163653   TRAV16D/DV11*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- 

                                                                                                                                   
  IMGT000082 TRAV16D/DV11*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- 

                                                                                    R                                              
  M16119     TRAV16D/DV11*03 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- -g- --- --- ... ... ... ... ... --- --- --- --- 



                                                                                                                   _______________C
                                                   
                                                    40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                    F   W   Y   K   Q   T   A   S   G   E   I   V   F   L   I   R   Q   D   S   Y  
  AC005855   TRAV16D/DV11*01 F   V-REGION gDNA     ttc tgg tac aag caa aca gca agt ggg gaa ata gtt ttc ctt att cgt cag gac tct tac 

                                                                                                                                   
  AE007512   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  AE008684   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  AC163653   TRAV16D/DV11*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  IMGT000082 TRAV16D/DV11*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  M16119     TRAV16D/DV11*03 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 



                                                   DR2-IMGT________________                                                        
                                                   
                                                    60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                            K   K   E   N   A   T   V                       G   H   Y   S   L   N  
  AC005855   TRAV16D/DV11*01 F   V-REGION gDNA     ... ... aaa aag gaa aat gca aca gtg ... ... ... ... ... ggt cat tat tct ctg aac 

                                                                                                                                   
  AE007512   TRAV16D/DV11*01 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                   
  AE008684   TRAV16D/DV11*01 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                   
  AC163653   TRAV16D/DV11*02 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                                   
  IMGT000082 TRAV16D/DV11*02 F   V-REGION gDNA     ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                    E                                              
  M16119     TRAV16D/DV11*03 (F) V-REGION cDNA     ... ... --- --- --- --- --- --- -aa ... ... ... ... ... --- --- --- --- --- --- 



                                                                                                                                   
                                                   
                                                    80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                                    F   Q   K   P   K       S   S   I   G   L   I   I   T   A   T   Q   I   E   D  
  AC005855   TRAV16D/DV11*01 F   V-REGION gDNA     ttt cag aag cca aaa ... agt tcc atc gga ctc atc atc acc gcc aca cag att gag gac 

                                                                                                                                   
  AE007512   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  AE008684   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  AC163653   TRAV16D/DV11*02 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  IMGT000082 TRAV16D/DV11*02 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                                   
  M16119     TRAV16D/DV11*03 (F) V-REGION cDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --t --- --- --- --- --- --- 



                                                                           _____CDR3-IMGT______
                                                   
                                                    99 100 101 102 103 104 105 106 107 108 
                                                    S   A   V   Y   F   C   A   M   R   E  
  AC005855   TRAV16D/DV11*01 F   V-REGION gDNA     tca gca gta tat ttc tgt gct atg aga gag gg

                                                                                           
  AE007512   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --

                                                                                           
  AE008684   TRAV16D/DV11*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --

                                                                                           
  AC163653   TRAV16D/DV11*02 F   V-REGION gDNA     --g --- --- --- --- --- --- --- --- --- --

                                                                                           
  IMGT000082 TRAV16D/DV11*02 F   V-REGION gDNA     --g --- --- --- --- --- --- --- --- --- --

                                                                                           
  M16119     TRAV16D/DV11*03 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- ---

This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).

Created:: 05/09/2022
Last updated:: 22/09/2023
Authors:: Guilhem Zeitoun