IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV3-4

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.

Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

Dots indicate gaps according to the IMGT unique numbering.
Blanks at the 5' and/or 3' end indicate partial sequences.
Asterisk (*) in the sequence indicate a STOP-CODON.
Letters in red correspond to amino acids which are polymorphic in the other alleles.
Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

                                                                                                                            
                                            
                                             1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                             G   E   Q   V   E   Q   R   P       P   H   L   S   V   P   E   G   D   S   A  
  AC003996   TRAV3-4*01 F V-REGION gDNA     ggc gag cag gtg gag cag cgc cct ... cct cac ctg agt gtc ccg gag gga gac agc gcc 

                                                                                                                            
  AC005938   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                            
  AE007512   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                            
  AE008685   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                     R                      
  IMGT000082 TRAV3-4*02 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- -g- --- --- --- --- --- 



                                                                        ___________________CDR1-IMGT____________________    
                                            
                                             20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                             V   I   I   C   T   Y   T   D   S   A                           T   A   Y   F  
  AC003996   TRAV3-4*01 F V-REGION gDNA     gtt atc atc tgc acc tac aca gac agt gcc ... ... ... ... ... ... aca gct tac ttc 

                                                                                                                            
  AC005938   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                            
  AE007512   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                            
  AE008685   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                             F                                                                              
  IMGT000082 TRAV3-4*02 F V-REGION gDNA     t-- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --t --- --- --- 



                                                                                                            _______________C
                                            
                                             40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                             Y   W   Y   K   Q   E   P   G   A   G   L   Q   L   L   M   S   V   F   S   N  
  AC003996   TRAV3-4*01 F V-REGION gDNA     tac tgg tac aag caa gag cca ggg gca ggt ctt cag ttg ctt atg agt gtc ttt tca aat 

                                                                                                                            
  AC005938   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                            
  AE007512   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                            
  AE008685   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                            
  IMGT000082 TRAV3-4*02 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 



                                            DR2-IMGT________________                                                        
                                            
                                             60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                         V   D   R   K   E   E                       Q   G   L   T   V   L  
  AC003996   TRAV3-4*01 F V-REGION gDNA     ... ... ... gtg gac aga aaa gaa gaa ... ... ... ... ... caa gga ctc act gtc tta 

                                                                                                                            
  AC005938   TRAV3-4*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                            
  AE007512   TRAV3-4*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                            
  AE008685   TRAV3-4*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                            
  IMGT000082 TRAV3-4*02 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 



                                                                                                                            
                                            
                                             80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                             L   N   K   K   D       K   Q   L   S   L   N   L   T   A   A   H   P   G   D  
  AC003996   TRAV3-4*01 F V-REGION gDNA     ctg aac aag aaa gac ... aaa caa ctc tct ctg aac ctc aca gct gcc cat cct ggg gac 

                                                                                                                            
  AC005938   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                            
  AE007512   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                            
  AE008685   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                         R                                                  
  IMGT000082 TRAV3-4*02 F V-REGION gDNA     --- --- --- --- --- ... --- -g- --- --- --- --- --- --- --- --- --- --- --- --- 



                                                                    ___CDR3-IMGT____
                                            
                                             99 100 101 102 103 104 105 106 107 
                                             S   A   V   Y   F   C   A   V   S  
  AC003996   TRAV3-4*01 F V-REGION gDNA     tca gcc gtg tac ttc tgc gca gtc agt g

                                                                                
  AC005938   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                
  AE007512   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                
  AE008685   TRAV3-4*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                
  IMGT000082 TRAV3-4*02 F V-REGION gDNA     --- --t --- --- --- --- --- --- --- -

This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).

Created:: 05/09/2022
Last updated:: 22/09/2023
Authors:: Guilhem Zeitoun