IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV3-3, TRAV3D-3 and TRAV3N-3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
Dots indicate gaps according to the IMGT unique numbering.
Blanks at the 5' and/or 3' end indicate partial sequences.
Asterisk (*) in the sequence indicate a STOP-CODON.
Letters in red correspond to amino acids which are polymorphic in the other alleles.
Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
                                                                                                                             
                                             
                                              1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                              G   E   Q   V   E   Q   R   P       P   H   L   S   V   R   E   G   D   S   A  
  AC003997   TRAV3-3*01  F V-REGION gDNA     ggc gag cag gtg gag cag cgc cct ... cct cac ctg agt gtc cgg gag gga gac agt gcc 

                                                                                                                             
  AE007512   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE008685   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AC005402   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE007512   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE008684   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AC161460   TRAV3N-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AC122813   TRAV3N-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV3N-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  X02933     TRAV3N-3*01 F V-REGION cDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AC163653   TRAV3D-3*02 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV3D-3*02 F V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 



                                                                         ___________________CDR1-IMGT____________________    
                                             
                                              20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                              V   I   T   C   T   Y   T   D   P   N                           S   Y   Y   F  
  AC003997   TRAV3-3*01  F V-REGION gDNA     gtt atc acc tgc acc tac aca gac cct aac ... ... ... ... ... ... agt tat tac ttc 

                                                                                                                             
  AE007512   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                             
  AE008685   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                              F                                                                              
  AC005402   TRAV3D-3*01 F V-REGION gDNA     t-- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                              F                                                                              
  AE007512   TRAV3D-3*01 F V-REGION gDNA     t-- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                              F                                                                              
  AE008684   TRAV3D-3*01 F V-REGION gDNA     t-- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                      I                                                                      
  AC161460   TRAV3N-3*01 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                      I                                                                      
  AC122813   TRAV3N-3*01 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                      I                                                                      
  IMGT000082 TRAV3N-3*01 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                      I                                                                      
  X02933     TRAV3N-3*01 F V-REGION cDNA     --- --- -t- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                      I                                                                      
  AC163653   TRAV3D-3*02 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                      I                                                                      
  IMGT000082 TRAV3D-3*02 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 



                                                                                                             _______________C
                                             
                                              40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                              F   W   Y   K   Q   E   P   G   A   S   L   Q   L   L   M   K   V   F   S   S  
  AC003997   TRAV3-3*01  F V-REGION gDNA     ttc tgg tac aag caa gag ccg ggg gca agt ctt cag ttg ctt atg aag gtt ttc tca agt 

                                                                                                                             
  AE007512   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE008685   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AC005402   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE007512   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE008684   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                  G                                          
  AC161460   TRAV3N-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- g-- --- --- --- --- --- --- --- --- --- --- 

                                                                                  G                                          
  AC122813   TRAV3N-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- g-- --- --- --- --- --- --- --- --- --- --- 

                                                                                  G                                          
  IMGT000082 TRAV3N-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- g-- --- --- --- --- --- --- --- --- --- --- 

                                                                                  G                                          
  X02933     TRAV3N-3*01 F V-REGION cDNA     --- --- --- --- --- --- --- --- --- g-- --- --- --- --- --- --- --- --- --- --- 

                                                                                  G                                          
  AC163653   TRAV3D-3*02 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- g-- --- --- --- --- --- --- --- --- --- --- 

                                                                                  G                                          
  IMGT000082 TRAV3D-3*02 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- g-- --- --- --- --- --- --- --- --- --- --- 



                                             DR2-IMGT________________                                                        
                                             
                                              60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                          T   E   I   N   E   G                       Q   G   F   T   V   L  
  AC003997   TRAV3-3*01  F V-REGION gDNA     ... ... ... acg gaa ata aac gaa gga ... ... ... ... ... caa gga ttc act gtc cta 

                                                                                                                             
  AE007512   TRAV3-3*01  F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  AE008685   TRAV3-3*01  F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV3-3*01  F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  AC005402   TRAV3D-3*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  AE007512   TRAV3D-3*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  AE008684   TRAV3D-3*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  AC161460   TRAV3N-3*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  AC122813   TRAV3N-3*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV3N-3*01 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  X02933     TRAV3N-3*01 F V-REGION cDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  AC163653   TRAV3D-3*02 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV3D-3*02 F V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 



                                                                                                                             
                                             
                                              80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                              L   N   K   K   D       K   R   L   S   L   N   L   T   A   A   H   P   G   D  
  AC003997   TRAV3-3*01  F V-REGION gDNA     ctg aac aag aaa gac ... aaa cga ctc tct ctg aac ctc aca gct gcc cat cct ggg gac 

                                                                                                                             
  AE007512   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE008685   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  IMGT000082 TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AC005402   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE007512   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                             
  AE008684   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                          Q                                                  
  AC161460   TRAV3N-3*01 F V-REGION gDNA     --- --- --- --- --- ... --- -a- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                          Q                                                  
  AC122813   TRAV3N-3*01 F V-REGION gDNA     --- --- --- --- --- ... --- -a- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                          Q                                                  
  IMGT000082 TRAV3N-3*01 F V-REGION gDNA     --- --- --- --- --- ... --- -a- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                          Q                                                  
  X02933     TRAV3N-3*01 F V-REGION cDNA     --- --- --- --- --- ... --- -a- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                          Q                                                  
  AC163653   TRAV3D-3*02 F V-REGION gDNA     --- --- --- --- --- ... --- -a- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                          Q                                                  
  IMGT000082 TRAV3D-3*02 F V-REGION gDNA     --- --- --- --- --- ... --- -a- --- --- --- --- --- --- --- --- --- --- --- --- 



                                                                     ___CDR3-IMGT____
                                             
                                              99 100 101 102 103 104 105 106 107 
                                              S   A   A   Y   F   C   A   V   S  
  AC003997   TRAV3-3*01  F V-REGION gDNA     tca gcc gcg tac ttc tgc gca gtc agt g

                                                                                 
  AE007512   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                 
  AE008685   TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                 
  IMGT000082 TRAV3-3*01  F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                 
  AC005402   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                 
  AE007512   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                 
  AE008684   TRAV3D-3*01 F V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                      V                          
  AC161460   TRAV3N-3*01 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- -

                                                      V                          
  AC122813   TRAV3N-3*01 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- -

                                                      V                          
  IMGT000082 TRAV3N-3*01 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- -

                                                      V                      
  X02933     TRAV3N-3*01 F V-REGION cDNA     --- --- -t- --- --- --- --- --- 

                                                      V                          
  AC163653   TRAV3D-3*02 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- -

                                                      V                          
  IMGT000082 TRAV3D-3*02 F V-REGION gDNA     --- --- -t- --- --- --- --- --- --- -
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
Created:: 05/09/2022
Last updated:: 22/09/2023
Authors:: Guilhem Zeitoun