IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV6-3 and TRAV6D-3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
Dots indicate gaps according to the IMGT unique numbering.
Blanks at the 5' and/or 3' end indicate partial sequences.
Asterisk (*) in the sequence indicate a STOP-CODON.
Letters in red correspond to amino acids which are polymorphic in the other alleles.
Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
                                                                                                                               
                                               
                                                1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                                G   D   S   V   I   Q   M   Q       G   Q   V   T   L   S   E   N   D   F   L  
  AC004407   TRAV6-3*01  F   V-REGION gDNA     gga gac tca gtg atc cag atg caa ... ggt caa gtg acc ctt tca gaa aat gac ttc tta 

                                                                                                                               
  AE007512   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AF259073   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --c --- --- --- 

                                                                                                                               
  AC005403   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --c --- --- --- 

                                                                                                                               
  AE007512   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --c --- --- --- 

                                                                                                                               
  AE008683   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --c --- --- --- 

                                                                                                                               
  AC122813   TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --c --- --- --- 

                                                                                                                               
  IMGT000082 TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --c --- --- --- 

                                                                                                    F                   S      
  M16675     TRAV6D-3*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- t-- --- --- --c --- -c- --- 

                                                                                                                               
  IMGT000082 TRAV6D-3*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --c --- --- --- 



                                                                           ___________________CDR1-IMGT____________________    
                                               
                                                20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                                F   I   N   C   T   Y   S   T   T   G                           Y   P   T   L  
  AC004407   TRAV6-3*01  F   V-REGION gDNA     ttt ata aac tgc act tat tca acc aca ggg ... ... ... ... ... ... tac ccg act ctt 

                                                                                                                               
  AE007512   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE008684   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AF259073   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AC005403   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE007512   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE008683   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AC122813   TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  M16675     TRAV6D-3*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV6D-3*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 



                                                                                                               _______________C
                                               
                                                40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                F   W   Y   V   Q   Y   S   G   E   G   P   Q   L   L   L   Q   V   T   T   A  
  AC004407   TRAV6-3*01  F   V-REGION gDNA     ttc tgg tat gtc caa tat tct gga gaa ggt cca cag ctc ctt ctg caa gtc aca act gcc 

                                                                                                                               
  AE007512   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AF259073   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC005403   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008683   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC122813   TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  M16675     TRAV6D-3*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV6D-3*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 



                                               DR2-IMGT________________                                                        
                                               
                                                60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                            N   N   K   G   S   S                       R   G   F   E   A   T  
  AC004407   TRAV6-3*01  F   V-REGION gDNA     ... ... ... aac aac aag gga agc agc ... ... ... ... ... aga ggt ttt gaa gct aca 

                                                                                                                               
  AE007512   TRAV6-3*01  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV6-3*01  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AF259073   TRAV6D-3*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AC005403   TRAV6D-3*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV6D-3*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AE008683   TRAV6D-3*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AC122813   TRAV6-3*02  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV6-3*02  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  M16675     TRAV6D-3*02 (F) V-REGION cDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV6D-3*03 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 



                                                                                                                               
                                               
                                                80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                                Y   D   K   G   T       T   S   F   H   L   Q   K   T   S   V   Q   E   I   D  
  AC004407   TRAV6-3*01  F   V-REGION gDNA     tat gat aaa gga acc ... act tcc ttc cac ttg cag aaa acc tca gtg caa gag ata gat 

                                                                                                                               
  AE007512   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008684   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AF259073   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC005403   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008683   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC122813   TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  M16675     TRAV6D-3*02 (F) V-REGION cDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV6D-3*03 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 



                                                                       ___CDR3-IMGT____
                                               
                                                99 100 101 102 103 104 105 106 107 
                                                S   A   V   Y   Y   C   A   M   R  
  AC004407   TRAV6-3*01  F   V-REGION gDNA     tcg gct gtg tac tac tgt gct atg aga ga

                                                                                   
  AE007512   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --

                                                                                   
  AE008684   TRAV6-3*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --

                                                                                   
  AF259073   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --

                                                                                   
  AC005403   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --

                                                                                   
  AE007512   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --

                                                                                   
  AE008683   TRAV6D-3*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --

                                                                                   
  AC122813   TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --

                                                                                   
  IMGT000082 TRAV6-3*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --

                                                                           
  M16675     TRAV6D-3*02 (F) V-REGION cDNA     --- --- --- --- --- --- --- --

                                                                                S  
  IMGT000082 TRAV6D-3*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --t --
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
Created:: 05/09/2022
Last updated:: 22/09/2023
Authors:: Guilhem Zeitoun