IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV7-2 and TRAV7D-2

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
Dots indicate gaps according to the IMGT unique numbering.
Blanks at the 5' and/or 3' end indicate partial sequences.
Asterisk (*) in the sequence indicate a STOP-CODON.
Letters in red correspond to amino acids which are polymorphic in the other alleles.
Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
                                                                                                                               
                                               
                                                1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                                Q   Q   K   V   Q   Q   S   P       E   S   L   I   V   P   E   G   G   M   A  
  AC004407   TRAV7-2*01  F   V-REGION gDNA     caa cag aag gta cag cag agc cca ... gaa tcc ctc att gtt cca gag gga ggc atg gcc 

                                                                                                                               
  AE007512   TRAV7-2*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AF259071   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --g --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --g --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008683   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --g --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC122813   TRAV7-2*02  F   V-REGION gDNA     --- --- --- --g --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7-2*02  F   V-REGION gDNA     --- --- --- --g --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --g --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  M38104     TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --g --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  X83009     TRAV7D-2*03 (F) V-REGION cDNA                                                                                     



                                                                           ___________________CDR1-IMGT____________________    
                                               
                                                20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                                S   L   N   C   T   S   S   D   R   N                           V   D   Y   F  
  AC004407   TRAV7-2*01  F   V-REGION gDNA     tct ctc aac tgc act tcc agt gat cgt aat ... ... ... ... ... ... gtt gac tac ttc 

                                                                                                                               
  AE007512   TRAV7-2*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AF259071   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE007512   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AE008683   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  AC122813   TRAV7-2*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7-2*02  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  M38104     TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                               
  X83009     TRAV7D-2*03 (F) V-REGION cDNA                                                                                     



                                                                                                               _______________C
                                               
                                                40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                                W   W   Y   R   Q   R   S   G   K   S   P   K   M   L   M   A   I   F   S      
  AC004407   TRAV7-2*01  F   V-REGION gDNA     tgg tgg tac aga cag cgc tct ggg aaa agc ccc aag atg ctg atg gct atc ttc tcc ... 

                                                                                                                               
  AE007512   TRAV7-2*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... 

                                                                    H                                       S                  
  AF259071   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- --- -a- --- --- --- --- --- --- --- --- --- t-- --- --- --- ... 

                                                                    H                                       S                  
  AE007512   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- --- -a- --- --- --- --- --- --- --- --- --- t-- --- --- --- ... 

                                                                    H                                       S                  
  AE008683   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- --- -a- --- --- --- --- --- --- --- --- --- t-- --- --- --- ... 

                                                                    H                                       S                  
  AC122813   TRAV7-2*02  F   V-REGION gDNA     --- --- --- --- --- -a- --- --- --- --- --- --- --- --- --- t-- --- --- --- ... 

                                                                    H                                       S                  
  IMGT000082 TRAV7-2*02  F   V-REGION gDNA     --- --- --- --- --- -a- --- --- --- --- --- --- --- --- --- t-- --- --- --- ... 

                                                                    H                                       S                  
  IMGT000082 TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --- --- -a- --- --- --- --- --- --- --- --- --- t-- --- --- --- ... 

                                                                    H                                       S                  
  M38104     TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --- --- -a- --- --- --- --- --- --- --- --- --- t-- --- --- --- ... 

                                                                                                                               
  X83009     TRAV7D-2*03 (F) V-REGION cDNA                                                                                     



                                               DR2-IMGT________________                                                        
                                               
                                                60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                            N   G   E   K   E   E                       G   R   F   T   V   H  
  AC004407   TRAV7-2*01  F   V-REGION gDNA     ... ... ... aat ggt gaa aag gaa gaa ... ... ... ... ... ggc aga ttc aca gtt cac 

                                                                                                                               
  AE007512   TRAV7-2*01  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  AF259071   TRAV7D-2*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --a --- 

                                                                                                                               
  AE007512   TRAV7D-2*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --a --- 

                                                                                                                               
  AE008683   TRAV7D-2*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --a --- 

                                                                                                                               
  AC122813   TRAV7-2*02  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7-2*02  F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7D-2*02 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  M38104     TRAV7D-2*02 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                               
  X83009     TRAV7D-2*03 (F) V-REGION cDNA                          -- --- --- --- ... ... ... ... ... --- --- --- --- --a --- 



                                                                                                                               
                                               
                                                80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                                L   N   K   A   S       L   H   T   S   L   H   I   R   D   S   Q   P   S   D  
  AC004407   TRAV7-2*01  F   V-REGION gDNA     ctc aat aaa gcc agc ... ctg cat act tcc ctg cac atc aga gac tcc cag ccc agt gac 

                                                                                                                               
  AE007512   TRAV7-2*01  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AF259071   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE007512   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AE008683   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  AC122813   TRAV7-2*02  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7-2*02  F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  IMGT000082 TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                               
  M38104     TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                        R                                               E                      
  X83009     TRAV7D-2*03 (F) V-REGION cDNA     --- --- -g- --- --- ... --- --- --- --- --- --- --- --- --g --g --a --- --- --- 



                                                                       ___CDR3-IMGT____
                                               
                                                99 100 101 102 103 104 105 106 107 
                                                S   A   L   Y   F   C   A   V   S  
  AC004407   TRAV7-2*01  F   V-REGION gDNA     tct gct ctc tac ttc tgt gca gtg agc a

                                                                                   
  AE007512   TRAV7-2*01  F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                L           A      
  AF259071   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- c-- --- --- -ca --- -

                                                                L           A      
  AE007512   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- c-- --- --- -ca --- -

                                                                L           A      
  AE008683   TRAV7D-2*01 F   V-REGION gDNA     --- --- --- --- c-- --- --- -ca --- -

                                                                L           A      
  AC122813   TRAV7-2*02  F   V-REGION gDNA     --- --- --- --- c-- --- --- -ca --- -

                                                                L           A      
  IMGT000082 TRAV7-2*02  F   V-REGION gDNA     --- --- --- --- c-- --- --- -ca --- -

                                                                L           A      
  IMGT000082 TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --- c-- --- --- -ca --- -

                                                                L           A  
  M38104     TRAV7D-2*02 F   V-REGION gDNA     --- --- --- --- c-- --- --- -ca 

                                                        V       L           T   R  
  X83009     TRAV7D-2*03 (F) V-REGION cDNA     --- --- g-- --- c-- --- --- aca --a
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
Created:: 05/09/2022
Last updated:: 22/09/2023
Authors:: Guilhem Zeitoun