The IMGT allele table refers to the V-REGION polymorphism. It does not include polymorphisms in the other parts of the V-GENE. V-REGION alleles are only described for genes which have at least one Functional or ORF allele. The accession number of a reference sequence is given for each allele.
Click on a gene name to get the alignment of the corresponding V-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).
Click on the strain name to get information on the strain (link to MGD)
For alleles only found in Mus musculus molossinus and Mus musculus castaneus subspecies and in Mus spretus specie, the subspecies and species name are added.
| IGKV subgroup |
IGKV gene name |
Fct | IGKV allele name |
Strains | Accession numbers | Confirmed by genetics and/or data |
Description of mutations |
| 1 | IGKV1-35 | ORF | V1-35*01 | C3H | AJ231200 | ||
| IGKV1-88 | F | V1-88*01 | C57BL/6 | AJ231206 | + | ||
| IGKV1-99 | F | V1-99*01 | C3H | AJ231207 | + | ||
| IGKV1-110 | F | V1-110*01 | BALB/c | D00080 | + | c57 |t96 |c118 ,H40 |a167 ,a168 ,K56 |c314 ,S105 |a319 ,S107 | |
|
| F | V1-110*02 | NZB/BINJ | M28132 | + | c57>t|t96>c|c118>t,H40>Y|a167>g,a168>g,K56>R|c314>t,S105>F|a319>g,S107>G| | ||
| IGKV1-117 | F | V1-117*01 | BALB/c | D00081 | + | t7 ,L3 |t204 ,F68 |t258 | | |
| F | V1-117*02 | CE/J | M28134 | + | t7>g,L3>V|t204>g,F68>L|t258>x| | ||
| IGKV1-122 | F | V1-122*01 | BALB/c | D00082 | + | ||
| IGKV1-131 | ORF | V1-131*01 | C57BL/6 | AJ231197 | |||
| IGKV1-132 | F | V1-132*01 | C57BL/6 | AJ231198 | + | ||
| IGKV1-133 | F | V1-133*01 | 129/Sv | Z72382 | + | ||
| IGKV1-135 | F | V1-135*01 | 129/Sv | Z72384 | + | ||
| 2 | IGKV2-109 | F | V2-109*01 | C3H | AJ132683 | + | a51 |c66 |g72 ,R24 |a97 ,N33 |a134 ,K45 |t162 |a167 ,Q56 |t255 |t258 |a232 ,S78 |a320 ,t231 ,N107 |c238 ,t239 ,t330 ,L110 | |
| F | V2-109*02 | BALB/c | K02418 | + | |t255>c|t258>c| | ||
| F | V2-109*03 | M.m.castaneus | M80409 | + | |c66>t|g72>t,R24>S| |a134>g,K45>R|t162>a|a167>g,Q56>R| |a232>g,S78>G|a320>t,t321>g,N107>M| | t329>g,t330>c,L110>R| | ||
| F | V2-109*04 | M.m.castaneus | M80410 | + | a51>g| |a97>g,N33>D|a134>g,K45>R|t162>a|a167>g,Q56>R| |a232>g,S78>G|a320>t,t321>g,N107>M|c328>t,t329>g, t330>c, L110>F| | ||
| IGKV2-112 | F | V2-112*01 | BALB/c | J00562 | + | a135 |a144 |a160 ,I54 |t167 ,L56 |c264 |c319 ,L107 | | |
| F | V2-112*02 | M.m.castaneus | M80407 | + | a135>g|a144>g|a160>g,I54>V|t167>g,L56>W|c264>a|c319>g,L107>V| | ||
| IGKV2-137 | F | V2-137*01 | C3H | AJ231263 | + | t6 |g7 ,t8 ,g9 ,V3 |t11,g12,a13,c14,t15 ,M4,T5 |c26 ,P9 |t30 |g31 ,t32 ,a33 ,V11 |c34 ,t36 ,P12 |a57 |a97 ,N33 |t116 ,L39 |c130 ,Q44 |g139 ,G47 |c142 ,Q47 |c149 ,P50 |g167 ,R56 |a169 ,M57 |g220 ,D74 |g224 ,R75 |a252 |c257 ,A86 |g285 |288^289 ,96^97 |g311 ,t312 ,C104 |a318 ,Q106 |c319 ,H107 |c322 |a318 ,E109 | |
|
| F | V2-137*02 | C3H | M80408 | + | t6>c|g7>c,t8>a,g9>c,V3>H|t11,g12,a13,c14,t15>del#,M4,T5>del#|c26>t,P9>L|t30>c|g31>a,t32>a,a33>t,V11>N|c34>g,t36>a,P12>A|a57>g|a97>g,N33>D|t116>g,L39>W|c130>t,Q44>*|g139>a,G47>S|c142>t,Q47>*|c149>t,P50>L|g167>t,R56>L|a169>g,M57>V|g220>c,D74>M|g224>t,R75>M|a252>g|c257>a,A86>D|g285>a|288^289>ins^gat,96^97>ins^D|g311>a,t312>c,C104>Y|a318>t,Q106>H|c319>a,H107>N|c322>t|a318>c,E109>D| |
||
| IGKV2-a | F | V2-a*01 | BALB/c | K02417 | + | ||
| 3 | IGKV3-1 | F | V3-1*01 | BALB/c | X16955 | + | |
| IGKV3-2 | F | V3-2*01 | BALB/c | X16954 | + | ||
| IGKV3-3 | F | V3-3*01 | BALB/c | K02162 | + | ||
| IGKV3-4 | F | V3-4*01 | C57BL/6 | Y15968 | + | ||
| IGKV3-5 | F | V3-5*01 | BALB/c | K02161 | + | ||
| IGKV3-7 | F | V3-7*01 | BALB/c | K02158 | + | ||
| IGKV3-9 | F | V3-9*01 | C57BL/6 | Y15972 | |||
| IGKV3-10 | F | V3-10*01 | BALB/c | K02160 | + | ||
| IGKV3-12 | F | V3-12*01 | BALB/c | K02159 | + | ||
| 4 | IGKV4-50 | F | V4-50*01 | C57BL/6 | AJ235938 | ||
| IGKV4-51 | F | V4-51*01 | V01565/J00575 | ||||
| IGKV4-52 | ORF | V4-52*01 | C57BL/6 | AJ239198 | |||
| IGKV4-53 | F | V4-53*01 | C57BL/6 | AJ231231 | + | ||
| IGKV4-54 | ORF | V4-54*01 | C57BL/6 | AJ231223 | |||
| IGKV4-55 | F | V4-55*01 | C57BL/6 | AJ231225 | + | ||
| IGKV4-57 | F | V4-57*01 | C57BL/6 | AJ231221 | + | ||
| IGKV4-57-1 | F | V4-57-1*01 | C57BL/6 | AC158673 | |||
| IGKV4-58 | F | V4-58*01 | BALB/c | K00884 | + | ||
| IGKV4-59 | F | V4-59*01 | BALB/c | S37664 | + | ||
| IGKV4-60 | P | V4-60*01 | C57BL/6 | AC156953 | |||
| IGKV4-61 | F | V4-61*01 | C57BL/6 | AJ231209 | + | ||
| IGKV4-62 | ORF | V4-62*01 | C57BL/6 | AJ231210 | |||
| IGKV4-63 | F | V4-63*01 | C57BL/6 | AJ231211 | + | ||
| IGKV4-68 | F | V4-68*01 | C57BL/6 | AJ231222 | + | ||
| IGKV4-69 | F | V4-69*01 | C57BL/6 | AJ235942 | + | ||
| IGKV4-70 | F | V4-70*01 | C57BL/6 | AJ235943 | + | ||
| IGKV4-71 | F | V4-71*01 | C57BL/6 | AJ231218 | |||
| IGKV4-72 | F | V4-72*01 | C57BL/6 | AJ231219 | + | ||
| IGKV4-73 | F | V4-73*01 | C57BL/6 | AJ231216 | |||
| IGKV4-74 | F | V4-74*01 | C57BL/6 | AJ231217 | + | ||
| IGKV4-78 | F | V4-78*01 | C57BL/6 | AJ231212 | |||
| IGKV4-79 | F | V4-79*01 | C57BL/6 | AJ231214 | + | ||
| IGKV4-80 | F | V4-80*01 | C57BL/6 | AJ231213 | + | ||
| IGKV4-81 | F | V4-81*01 | C57BL/6 | AJ231215 | |||
| IGKV4-86 | F | V4-86*01 | BALB/c | X05555 | + | ||
| IGKV4-90 | F | V4-90*01 | C57BL/6 | AJ231224 | + | ||
| IGKV4-91 | F | V4-91*01 | C57BL/6 | AJ231229 | + | ||
| IGKV4-92 | F | V4-92*01 | C57BL/6 | AJ231226 | |||
| 5 | IGKV5-37 | F | V5-37*01 | C57BL/6 | AJ235963 | + | |
| IGKV5-39 | F | V5-39*01 | C57BL/6 | AJ235964 | + | ||
| IGKV5-43 | F | V5-43*01 | C3H | AJ235973 | + | ||
| IGKV5-45 | F | V5-45*01 | C57BL/6 | AJ235974 | + | ||
| IGKV5-48 | F | V5-48*01 | BALB/c | V01564 | + | ||
| 6 | IGKV6-13 | (F) | V6-13*01 | J00569 | + | ||
| IGKV6-14 | F | V6-14*01 | C57BL/6 | Y15975 | + | ||
| IGKV6-15 | F | V6-15*01 | C57BL/6 | Y15976 | + | ||
| IGKV6-17 | F | V6-17*01 | C57BL/6 | Y15978 | + | ||
| IGKV6-20 | F | V6-20*01 | C57BL/6 | Y15981 | + | ||
| IGKV6-23 | F | V6-23*01 | C57BL/6 | AJ235961 | + | ||
| IGKV6-25 | F | V6-25*01 | C57BL/6 | AJ235962 | + | ||
| IGKV6-29 | F | V6-29*01 | C57BL/6 | AJ235967 | |||
| IGKV6-32 | F | V6-32*01 | C57BL/6 | AJ235968 | + | c51 ,D17 | | |
| F | V6-32*02 | BALB/c | M14360 | c51>g,D17>E| | |||
| IGKV6-b | F | V6-b*01 | C58 | M14361 | + | ||
| IGKV6-c | F | V6-c*01 | SK | M24937 | + | ||
| IGKV6-d | F | V6-d*01 | PERA | L36249 | + | ||
| 7 | IGKV7-33 | F | V7-33*01 | BALB/c | AF044198 | + | |
| 8 | IGKV8-16 | F | V8-16*01 | C57BL/6 | Y15977 | + | |
| IGKV8-18 | ORF | V8-18*01 | C57BL/6 | Y15979 | |||
| IGKV8-19 | F | V8-19*01 | C57BL/6 | Y15980 | + | ||
| IGKV8-21 | F | V8-21*01 | C57BL/6 | Y15982 | + | ||
| IGKV8-23-1 | ORF | V8-23-1*01 | C57BL/6 | AC155332 | |||
| IGKV8-24 | F | V8-24*01 | C57BL/6 | AJ235944 | + | ||
| IGKV8-26 | ORF | V8-26*01 | C57BL/6 | AJ235945 | |||
| IGKV8-27 | F | V8-27*01 | C57BL/6 | AJ235946 | + | ||
| IGKV8-28 | F | V8-28*01 | C57BL/6 | AJ235947 | + | g51 ,E17 |g97 ,G33 |t102 |g139 ,G47 |t157 |c255 |t267 |c322 ,H108 | | |
| F | V8-28*02 | MRL | L17135 | g51>t,E17>D|g97>a,G33>R|t102>c|g139>t,G47>W|t157>c|c255>a|t267>c|c322>t,H108>Y| | |||
| IGKV8-30 | F | V8-30*01 | C3H | AJ235948 | + | ||
| IGKV8-34 | F | V8-34*01 | 129/Sv | AJ235958 | |||
| 9 | IGKV9-120 | F | V9-120*01 | C57BL/6 | V00804 | + | |
| IGKV9-123 | F | V9-123*01 | AF003295 | + | |||
| IGKV9-124 | F | V9-124*01 | AF003294 | + | |||
| IGKV9-129 | F | V9-129*01 | BALB/c | K00880 | + | ||
| 10 | IGKV10-94 | F | V10-94*01 | A/J | M54906 | + | c43 |c63 |t72 ,S24 |c79 ,Q27 |g83 ,c84 ,G28 |a134 ,K45 |c156 |t165 |a169 ,T57 |t198 ,S66 |t247 |c273 |t288 |t312 |g315 |t319 ,Y107 |g327 ,K109 |t129 ,L110 | |
| F | V10-94*02 | PERU | M54908 | c43>t| |t165>c| |t198>a,S66>R| |g327>t,K109>N| | |||
| F | V10-94*03 | AKR | M54904 | + | |t72>g,S24>R| |g83>a,c84>t,G28>D| |t165>c| |t198>a,S66>R| | ||
| F | V10-94*04 | CZECHII/Ei | AF441453 | |t72>g,S24>R| |g83>a, ,G28>D| |c156>a|t165>c| |t198>a,S66>R| | |||
| F | V10-94*05 | WSB/Ei | AF441462 | |t72>g,S24>R| |g83>a,c84>t,G28>D| |t165>c| |t198>a,S66>R| |t129>g,L110>R| | |||
| F | V10-94*06 | AF441455 | |c63>t|t72>g,S24>R| |g83>a, ,G28>D| |t165>c| |t198>a,S66>R| |c273>t|t288>g|t312>c|g315>a|t319>g,Y107>D| | ||||
| F | V10-94*07 | M.m.castaneus | AF441452 | |t72>g,S24>R| |g83>a,c84>t,G28>D|a134>g,K45>R| |t165>c| |t198>a,S66>R| | |||
| F | V10-94*08 | M.m.molossinus | AF441457 | |t72>g,S24>R| |g83>a,c84>t,G28>D| |t165>c| |t198>a,S66>R| | |||
| F | V10-94*01 | M.spretus | AF441461 | |t72>g,S24>R|c79>g,Q27>E|g83>a, ,G28>D| |a169>g,T57>A| | |||
| IGKV10-95 | F | V10-95*01 | BALB/c | AF029261 | + | ||
| IGKV10-96 | F | V10-96*01 | A/J | M15520 | + | a24 |a75 |t121 ,W41 |c127 ,Q43 |c156 |g225 |a252 |c270 |g285 |g320 ,G107 |a323 ,N108 |c326 ,T109 |t329 ,L110 | | |
| F | V10-96*01 | M.spretus | AF441451 (2) | |g285>a| |a323>g, N108>S| | |||
| F | V10-96*02 | PERU | M54907 | + | a75>c| |a252>g| |g285>a| |a323>g,N108>S| | ||
| F | V10-96*03 | AKR | M54903 | |a252>g|c270>t|g285>a|g320>a,G107>D|a323>g,N108>S|c326>a,T109>K|t329>a,L110>H| | |||
| F | V10-96*03 | M.m.molossinus | AF441448 (1) | |a252>g|c270>t|g285>a|g320>a,G107>D|a323>g,N108>S|c326>a,T109>K|t329>a,L110>H| | |||
| F | V10-96*04 | CZECHII/Ei | AF441444 | |c156>a| |a252>g|c270>t|g285>a|g320>a,G107>D|a323>g,N108>S|c326>a,T109>K|t329>a,L110>H| | |||
| P | V10-96*05 | AF441445 | a24>t| |c127>t,Q43>*|c156>a|g225>a|a252>g|c270>t|g285>a|g320>a,G107>D|a323>g,N108>S|c326>a,T109>K|t329>a,L110>H| | ||||
| F | V10-96*06 | M.m.castaneus | AF441443 | |t121>g,W41>G| |a252>g|c270>t|g285>a|g320>a,G107>D|a323>g,N108>S|c326>a,T109>K|t329>a,L110>H| | |||
| 11 | IGKV11-125 | F | V11-125*01 | 129/Sv | AJ231256 | + | |
| 12 | IGKV12-38 | F | V12-38*01 | C57BL/6 | AJ235951 | + | |
| IGKV12-41 | F | V12-41*01 | C57BL/6 | AJ235953 | + | t48 | | |
| F | V12-41*02 | BALB/c | J00545 | + | t48>a| | ||
| IGKV12-44 | F | V12-44*01 | C3H | AJ235955 | + | ||
| IGKV12-46 | F | V12-46*01 | C57BL/6 | AJ235956 | + | ||
| IGKV12-89 | F | V12-89*01 | C57BL/6 | AJ235950 | + | ||
| IGKV12-98 | F | V12-98*01 | C3H | AJ235949 | + | ||
| IGKV12-e | F | V12-e*01 | BALB/c | J00546 | |||
| 13 | IGKV13-84 | F | V13-84*01 | C57BL/6 | AJ231273 | + | |
| IGKV13-85 | F | V13-85*01 | C57BL/6 | AJ231274 | + | a29 ,Y10 |g50 ,G17 |c81 ,D27 |a92 ,N31 |g132 |g239 ,G80 |c276 | | |
| F | V13-85*02 | BALB/c | M35154 | |c81>g,D27>E|a92>g,N31>S| |c276>t| | |||
| F | V13-85*03 | AKR | M35155 | a29>c,Y10>S|g50>a,G17>D|c81>g,D27>E|a92>g,N31>S|g132>a|g239>c,G80>A|c276>t| | |||
| 14 | IGKV14-100 | F | V14-100*01 | C3H | AJ231243 | + | |
| IGKV14-111 | F | V14-111*01 | BALB/c | V01563 | + | ||
| IGKV14-130 | F | V14-130*01 | C57BL/6 | AJ231241 | + | ||
| 15 | IGKV15-103 | ORF | V15-103*01 | C3H | AJ231269 | + | |
| 16 | IGKV16-104 | F | V16-104*01 | C3H | AJ235936 | + | |
| 17 | IGKV17-121 | F | V17-121*01 | C57BL/6 | AJ231258 | + | |
| IGKV17-127 | F | V17-127*01 | C57BL/6 | AJ231259 | + | 18 | IGKV18-36 | F | V18-36*01 | C3H | AJ235966 |
| 19 | IGKV19-93 | F | V19-93*01 | C57BL/6 | AJ235935 | + | |
| F | V19-93*02 | S65298 | + | g153>a, t237>c |
IMGT notes
(1): AF441448 from Mus mus molossinus has been assigned to IGKV10-69*03, instead of *07 (26-05-2007, by Joumana Jabado-Michaloud and Marie-Paule lefranc)
(2): AF441451, IGKV10-96*01 allele is from Mus spretus.
Created: 09/10/2003
Last updated: Friday, 22-Sep-2023 18:31:06 CEST
Authors: Delphine Guiraudou and Joumana Jabado-Michaloud
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