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Table of alleles: Mouse ( Mus musculus) TRAJ

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT numbering and description of alleles for germline J-REGIONs start with the first nucleotide of the first codon. The accession number of a reference sequence is given for each allele.

Click on a gene name to get the alignment of the corresponding J-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).

TRAJ
gene name Fct TRAJ
allele name Strain Accession
number Confirmed by
genetics
and/or data Description of mutations

TRAJ2 F TRAJ2*01 B10.D2-H2^dm1 M64239 g9-a11         ,G3    |

TRAJ2*02 B10.A M38103 g9-a11>del(3nt),G3>del|

TRAJ3 ORF TRAJ3*01 B10.D2-H2^dm1 M64239

TRAJ4 ORF TRAJ4*01 B10.D2-H2^dm1 M64239

TRAJ5 F TRAJ5*01 B10.A M38105 +

TRAJ6 F TRAJ6*01 B10.D2-H2^dm1 M64239

TRAJ7 ORF TRAJ7*01 B10.D2-H2^dm1 M64239

TRAJ9 F TRAJ9*01 BALB/c X03761 + c43  |

(F) TRAJ9*02 C57Bl/Ka X02933 + c43>t|

TRAJ11 F TRAJ11*01 B10.D2-H2^dm1 M64239

TRAJ12 F TRAJ12*01 B10.D2-H2^dm1 M64239 +

TRAJ13 F TRAJ13*01 B10.D2-H2^dm1 M64239 +

TRAJ15 F TRAJ15*01 B10.D2-H2^dm1 M64239 +

TRAJ16 F TRAJ16*01 B10.D2-H2^dm1 X03057 +

TRAJ17 F TRAJ17*01 B10.D2-H2^dm1 M64239

TRAJ18 F TRAJ18*01 B10.D2-H2^dm1 M64239 +

TRAJ19 ORF TRAJ19*01 B10.D2-H2^dm1 M64239

TRAJ20 ORF TRAJ20*01 B10.D2-H2^dm1 M64239

TRAJ21 F TRAJ21*01 B10.D2-H2^dm1 M64239 + a34  ,T12  |

(F) TRAJ21*02
C57BL/10
X52448 + a34>t,T12>S|

TRAJ22 F TRAJ22*01 B10.D2-H2^dm1 M64239 +

TRAJ23 F TRAJ23*01 B10.D2-H2^dm1 M64239 +

TRAJ24 F TRAJ24*01 B10.D2-H2^dm1 M64239 +

TRAJ25 ORF TRAJ25*01 B10.D2-H2^dm1 M64239

TRAJ26 F(1) TRAJ26*01 B10.D2-H2^dm1 M64239

TRAJ27 F TRAJ27*01 B10.D2-H2^dm1 M64239 +

TRAJ28 F TRAJ28*01
Std:ddY
X17177 +

TRAJ29 ORF TRAJ29*01 B10.D2-H2^dm1 M64239

TRAJ30 F TRAJ30*01 B10.D2-H2^dm1 M64239 +

TRAJ31 F TRAJ31*01 B10.D2-H2^dm1 M64239 +

TRAJ32 F TRAJ32*01
B10.D2-H2^dm1
X02858 +

TRAJ33 F TRAJ33*01 B10.D2-H2^dm1 M64239 +

TRAJ34 F TRAJ34*01
BALB/c
X02862 + g13  ,D5  |c27  |c51  |c53  ,S18  |

(F) TRAJ34*02
B10.S/9R
M20875 + g13>a,D5>N|c27>t|c51>a|c53>t,S18>L|

TRAJ35 F TRAJ35*01
B10.D2-H2^dm1
X03056 + c52-a54         ,P18    |t55  ,g56  ,C19  |

F TRAJ35*02
BALB/c
X02843 + c52-a54>del(3nt),P18>del|t55>g,g56>t,C19>V|

TRAJ37 F TRAJ37*01 B10.D2-H2^dm1 M64239 +

TRAJ38 F TRAJ38*01 B10.D2-H2^dm1 M64239 +

TRAJ39 F TRAJ39*01 B10.D2-H2^dm1 M64239 +

TRAJ40 F TRAJ40*01
B10.D2-H2^dm1
X03058 +

TRAJ41 ORF TRAJ41*01 B10.D2-H2^dm1 M64239

TRAJ42 F TRAJ42*01 B10.D2-H2^dm1 M64239 + a28  ,T10  |a39  |a60  |

(F) TRAJ42*02
C57BL/6
M16675 + a28>g,T10>A|a39>g|a60>g|

TRAJ43 F TRAJ43*01 B10.D2-H2^dm1 M64239 c19  ,g20  ,R7  |t43  ,S15  |

(F) TRAJ43*02 DBA/2 X55823 + c19>g,g20>c,R7>A|t43>a,S15>T|

TRAJ44 ORF TRAJ44*01 B10.D2-H2^dm1 M64239 +

TRAJ45 F TRAJ45*01
B10.D2-H2^dm1
X02859 +

TRAJ46 ORF TRAJ46*01 B10.D2-H2^dm1 M64239

TRAJ47 ORF TRAJ47*01 B10.D2-H2^dm1 M64239

TRAJ48 F TRAJ48*01 B10.D2-H2^dm1 M64239 +

TRAJ49 F TRAJ49*01
B10.D2-H2^dm1
X03059 +

TRAJ50 F TRAJ50*01 B10.D2-H2^dm1 M64239 +

TRAJ52 F TRAJ52*01 B10.D2-H2^dm1 M64239 +

TRAJ53 F TRAJ53*01 B10.D2-H2^dm1 M64239

TRAJ56 F TRAJ56*01 B10.D2-H2^dm1 M64239 +

TRAJ57 F TRAJ57*01 B10.D2-H2^dm1 M64239 +

TRAJ58 F TRAJ58*01 B10.D2-H2^dm1 M64239 +

TRAJ59 ORF TRAJ59*01 B10.D2-H2^dm1 M64239

(1) The deletion of c26 in the TRAJ26 J-REGION, in M64239 and AE008686, is probably due to a sequencing error. The functionality of TRAJ26 was changed (on 19/01/2007) from pseudogene (due to a frameshift) to functional.

Created: 11/07/2001
Last updated: Friday, 22-Sep-2023 18:31:06 CEST
Author: Nathalie Bosc

TRAJ gene name	Fct	TRAJ allele name	Strain	Accession number	Confirmed by genetics and/or data	Description of mutations
TRAJ2	F	TRAJ2*01	B10.D2-H2^dm1	M64239		`g9-a11 ,G3 \|`
TRAJ2	F	TRAJ2*02	B10.A	M38103		`g9-a11>del(3nt),G3>del\|`
TRAJ3	ORF	TRAJ3*01	B10.D2-H2^dm1	M64239
TRAJ4	ORF	TRAJ4*01	B10.D2-H2^dm1	M64239
TRAJ5	F	TRAJ5*01	B10.A	M38105	+
TRAJ6	F	TRAJ6*01	B10.D2-H2^dm1	M64239
TRAJ7	ORF	TRAJ7*01	B10.D2-H2^dm1	M64239
TRAJ9	F	TRAJ9*01	BALB/c	X03761	+	`c43 \|`
TRAJ9	(F)	TRAJ9*02	C57Bl/Ka	X02933	+	`c43>t\|`
TRAJ11	F	TRAJ11*01	B10.D2-H2^dm1	M64239
TRAJ12	F	TRAJ12*01	B10.D2-H2^dm1	M64239	+
TRAJ13	F	TRAJ13*01	B10.D2-H2^dm1	M64239	+
TRAJ15	F	TRAJ15*01	B10.D2-H2^dm1	M64239	+
TRAJ16	F	TRAJ16*01	B10.D2-H2^dm1	X03057	+
TRAJ17	F	TRAJ17*01	B10.D2-H2^dm1	M64239
TRAJ18	F	TRAJ18*01	B10.D2-H2^dm1	M64239	+
TRAJ19	ORF	TRAJ19*01	B10.D2-H2^dm1	M64239
TRAJ20	ORF	TRAJ20*01	B10.D2-H2^dm1	M64239
TRAJ21	F	TRAJ21*01	B10.D2-H2^dm1	M64239	+	`a34 ,T12 \|`
TRAJ21	(F)	TRAJ21*02	C57BL/10	X52448	+	`a34>t,T12>S\|`
TRAJ22	F	TRAJ22*01	B10.D2-H2^dm1	M64239	+
TRAJ23	F	TRAJ23*01	B10.D2-H2^dm1	M64239	+
TRAJ24	F	TRAJ24*01	B10.D2-H2^dm1	M64239	+
TRAJ25	ORF	TRAJ25*01	B10.D2-H2^dm1	M64239
TRAJ26	F(1)	TRAJ26*01	B10.D2-H2^dm1	M64239
TRAJ27	F	TRAJ27*01	B10.D2-H2^dm1	M64239	+
TRAJ28	F	TRAJ28*01	Std:ddY	X17177	+
TRAJ29	ORF	TRAJ29*01	B10.D2-H2^dm1	M64239
TRAJ30	F	TRAJ30*01	B10.D2-H2^dm1	M64239	+
TRAJ31	F	TRAJ31*01	B10.D2-H2^dm1	M64239	+
TRAJ32	F	TRAJ32*01	B10.D2-H2^dm1	X02858	+
TRAJ33	F	TRAJ33*01	B10.D2-H2^dm1	M64239	+
TRAJ34	F	TRAJ34*01	BALB/c	X02862	+	`g13 ,D5 \|c27 \|c51 \|c53 ,S18 \|`
TRAJ34	(F)	TRAJ34*02	B10.S/9R	M20875	+	`g13>a,D5>N\|c27>t\|c51>a\|c53>t,S18>L\|`
TRAJ35	F	TRAJ35*01	B10.D2-H2^dm1	X03056	+	`c52-a54 ,P18 \|t55 ,g56 ,C19 \|`
TRAJ35	F	TRAJ35*02	BALB/c	X02843	+	`c52-a54>del(3nt),P18>del\|t55>g,g56>t,C19>V\|`
TRAJ37	F	TRAJ37*01	B10.D2-H2^dm1	M64239	+
TRAJ38	F	TRAJ38*01	B10.D2-H2^dm1	M64239	+
TRAJ39	F	TRAJ39*01	B10.D2-H2^dm1	M64239	+
TRAJ40	F	TRAJ40*01	B10.D2-H2^dm1	X03058	+
TRAJ41	ORF	TRAJ41*01	B10.D2-H2^dm1	M64239
TRAJ42	F	TRAJ42*01	B10.D2-H2^dm1	M64239	+	`a28 ,T10 \|a39 \|a60 \|`
TRAJ42	(F)	TRAJ42*02	C57BL/6	M16675	+	`a28>g,T10>A\|a39>g\|a60>g\|`
TRAJ43	F	TRAJ43*01	B10.D2-H2^dm1	M64239		`c19 ,g20 ,R7 \|t43 ,S15 \|`
TRAJ43	(F)	TRAJ43*02	DBA/2	X55823	+	`c19>g,g20>c,R7>A\|t43>a,S15>T\|`
TRAJ44	ORF	TRAJ44*01	B10.D2-H2^dm1	M64239	+
TRAJ45	F	TRAJ45*01	B10.D2-H2^dm1	X02859	+
TRAJ46	ORF	TRAJ46*01	B10.D2-H2^dm1	M64239
TRAJ47	ORF	TRAJ47*01	B10.D2-H2^dm1	M64239
TRAJ48	F	TRAJ48*01	B10.D2-H2^dm1	M64239	+
TRAJ49	F	TRAJ49*01	B10.D2-H2^dm1	X03059	+
TRAJ50	F	TRAJ50*01	B10.D2-H2^dm1	M64239	+
TRAJ52	F	TRAJ52*01	B10.D2-H2^dm1	M64239	+
TRAJ53	F	TRAJ53*01	B10.D2-H2^dm1	M64239
TRAJ56	F	TRAJ56*01	B10.D2-H2^dm1	M64239	+
TRAJ57	F	TRAJ57*01	B10.D2-H2^dm1	M64239	+
TRAJ58	F	TRAJ58*01	B10.D2-H2^dm1	M64239	+
TRAJ59	ORF	TRAJ59*01	B10.D2-H2^dm1	M64239