Print of this table: Bosc, N. and Lefranc, M.-P., Dev. Comp. Immunol., 27, 465-497 (2003). PMID:12697305
UPDATE: 30/04/2003 |
Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
The IMGT allele table refers to the V-REGION polymorphism. It does not include polymorphisms in the other parts of the V-GENE. V-REGION alleles are only described for genes which have at least one Functional or ORF allele. The accession number of a reference sequence is given for each allele.
Nucleotide mutations and amino acid changes in CDR3-IMGT of rearranged sequences are not taken into account for the description of polymorphism.
Click on a gene name to get the alignment of the corresponding V-REGION alleles.
Click on an accession number to get the sequence and additional information (IMGT annotations, IMGT flat file, Coding regions...).
In this Table of alleles and in Alignments of alleles: TRAV, are reported V-REGION alleles from the 10 TRAV/DV genes identified so far:
- Eight TRAV/DV genes (TRAV4-4/DV10, TRAV6-7/DV9, TRAV13-4/DV7, TRAV14D-3/DV8, TRAV15D-1/DV6D-1, TRAV15-1/DV6-1, TRAV16D/DV11 and TRAV21/DV12) which have
been found rearranged to TRAJ genes and to (D)J-GENEs of the TRD locus.
- TRAV15-2/DV6-2 and TRAV15D-2/DV6D-2, which are assigned to the TRAV15 subgroup on the basis of sequence alignment, although they have not yet been found rearranged to TRAJ genes.
TRAV subgroup |
TRAV gene name |
Fct |
TRAV allele name |
Strain |
Accession number |
Confirmed by genetics and/or data |
Description of mutation (1) |
TRAV1 | TRAV1 | F | TRAV1*01 | 129/SvJ | AF259072 | + | c9 |a26 ,D9 |c30 ,N10 |a42 |t93 |c144 ,H48 |c150 |a243 | |
(F) | TRAV1*02 | B10.A | M22604 |   | c9>t|a26>c,D9>A|c30>a,N10>K|a42>g|t93>c|c144>a,H48>Q|c150>t|a243>t| | ||
TRAV2 | TRAV2 | F | TRAV2*01 | 129/SvJ | AF259071 | + | |
TRAV3 | TRAV3-1 | F | TRAV3-1*01 | 129/SvJ | AF259071 |   | g55 ,A19 | |
(F) | TRAV3-1*02 | C3H | AJ311366 |   | g55>t,A19>S| | ||
TRAV3D-3 | F | TRAV3D-3*01 | 129/SvJ | AC005402 |   | TRAV3-3 | F | TRAV3-3*01 | 129/SvJ | AC003997 | + | c65 ,T22 |a145 ,S49 |g257 ,R86 |c302 ,A101 | |
(F) | TRAV3-3*02 | C57BL/Ka | X02933 |   | c65>t,T22>I|a145>g,S49>G|g257>a,R86>Q|c302>t,A101>V| | ||
TRAV3-4 | F | TRAV3-4*01 | 129/SvJ | AC003996 | + | ||
TRAV4 | TRAV4D-3 | F | TRAV4D-3*01 | 129/SvJ | AC005402 | + | a7 ,K3 |a13 ,K5 |g15 |c22 ,P8 |g45 |a66 |c84 |c153 ,I51 |t171 |c172 ,P58 |a244 ,T82 |c249 |a250 ,N84 |t266 ,L89 |c273 |g291 |293 | |
(F) | TRAV4D-3*02 | B10.A | M22603 | + | |c84>t|c153>g,I51>M|t171>g| |a244>g,T82>A|c249>t|a250>g,N84>D| |c273>t| | ||
(F) | TRAV4D-3*03 | A/J | M73265 | |c22>g,P8>A| |a66>g| |t266>c,L89>P| | |||
(F) | TRAV4D-3*04 | C57BL/6 | M87844 | + | |g15>a| |g45>a| |a244>g,T82>A| |a250>g,N84>D| | ||
(F) | TRAV4D-3*05 | S81113 |   | |g45>a| |c153>g,I51>M| |g291 | | |||
(F) | TRAV4D-3*06 | B10.A | U63776 |   | a7>c,K3>Q|a13>g,K5>E| |c84>t|c153>g,I51>M|t171>g|c172>t,P58>S|a244>g,T82>A|c249>t|a250>g,N84>D| |c273>t| |293^294>ins^cccagctggagg#| | ||
TRAV4D-4 | F | TRAV4D-4*01 | 129/SvJ | AC005855 | + | g43 ,E15 |a52 ,S18 |g78 |c86 ,T29 |a91 ,g92 ,S31 |g128 ,R43 |c130 ,Q44 |c162 ,F54 |c235 |g244 ,A82 |t249 |g250 ,D84 |c253 ,t254 ,L85 |293 | | |
(F) | TRAV4D-4*02 | B10.A | X02968 | + | |a52>g,S18>G| |c86>t,T29>M|a91>g,g92>c,S31>A|g128>a,R43>A| |c235>t|g244>a,A82>T|t249>c|g250>a,D84>N|c253>a,t254>g,L85>S| | ||
(F) | TRAV4D-4*03 | B10.A | X03860 | + | |a52>g,S18>G|g78>t|c86>t,T29>M|a91>g,g92>c,S31>A| |c130>a,Q44>K| |t254>g,L85>R| | ||
(F) | TRAV4D-4*04 | DBA/2 | M73264 | g43>a,E15>K|a52>g,S18>G|g78>t| |a91>g,g92>c,S31>A| |t254>g,L85>R| | |||
(F) | TRAV4D-4*05 | B10.A | U63758 | + | |a52>g,S18>G|g78>t|c86>t,T29>M|a91>g,g92>c,S31>A| |c130>a,Q44>K|c162>g,F54>L| |t254>g,L85>R|293^294>ins^cccagctggagg#| | ||
TRAV4-2 | F | TRAV4-2*01 | 129/SvJ | AC004407 |   | c54 |a91 ,S31 | | |
(F) | TRAV4-2*02 | C57BL/6 | M87848 | + | c54>g|a91>g,S31>G| | ||
TRAV4-3 | F | TRAV4-3*01 | 129/SvJ | AC003997 |   | a53 ,N18 |c136 ,P46 | | |
(F) | TRAV4-3*02 | BALB/c nu/nu | M27351 |   | a53>g,N18>S|c136>t,P46>S| | ||
TRAV4-4/DV10 | F | TRAV4-4/DV10*01 | 129/SvJ | AC004102 | + | ||
TRAV5 | TRAV5-1 | F | TRAV5-1*01 | 129/SvJ | AF259071 | ||
TRAV5D-4 | ORF | TRAV5D-4*01 | 129/SvJ | AC005855 | g9 |c71 ,T24 |g78 |a79 ,N27 |a146 ,N49 |a199 ,K67 | | ||
(F) | TRAV5D-4*02 | SWR x NZB (F1) | U07877 |   | |c71>g,T24>S|g78>a|a79>g,N27>D| |a199>g,K67>E| | ||
(F) | TRAV5D-4*03 | SWR x NZB (F1) | U07876 |   | |a146>g,N49>S| | ||
(F) | TRAV5D-4*04 | NOD | U80816 |   | g9>a|c71>g,T24>S|g78>a|a79>g,N27>D| | ||
TRAV5-4 | ORF | TRAV5-4*01 | 129/SvJ | AC003995 | + | ||
TRAV6 | TRAV6-1 | F | TRAV6-1*01 | 129/SvJ | AF259071 |   | g12 |c138 |a250B ,R84B | |
(F) | TRAV6-1*02 | C57BL/6 | X14387 |   | g12>a|c138>t|a250B>g,R84B>G| | ||
TRAV6-2 | F | TRAV6-2*01 | 129/SvJ | AF259071 |   | g198 |a288 | | |
(F) | TRAV6-2*02 | C57BL/6 x DBA/2 (F1) | X03669 |   | |a288>g| | ||
(F) | TRAV6-2*03 | BALB/c | U21455 | g198>a| | |||
TRAV6D-3 | F | TRAV6D-3*01 | 129/SvJ | AF259073 | + | c37 ,L13 |t53 ,F18 | | |
(F) | TRAV6D-3*02 | C57BL/6 | M16675 |   | c37>t,L13>F|t53>c,F18>S| | ||
TRAV6D-4 | F | TRAV6D-4*01 | 129/SvJ | AC005403 |   | ||
TRAV6D-5 | F | TRAV6D-5*01 | 129/SvJ | AC003994 | + | ||
TRAV6D-6 | F | TRAV6D-6*01 | 129/SvJ | AC004101 | + | a29 ,Q10 |g33 |c36 |c39 |t40 ,S14 |a49 ,K17 |c92 ,A31 |t135 |c137 ,P46 |t149 ,a150 ,L50 |a250C ,T84C |a291 |t312 | | |
F | TRAV6D-6*02 | C57BL/6 | X05187 | + | a29>c,Q10>P| |a49>g,K17>E| | ||
(F) | TRAV6D-6*03 | C57BL/10 | M16676 |   | |c36>t| |c92>G,A31>G|t135>c|c137>t,P46>L|t149>c,a150>g,L50>P|a250C>g,T84C>A|a291>g|t312>c| | ||
(F) | TRAV6D-6*04 | BALB/c | U21397 |   | |g33>t|c36>t|c39>t|t40>a,S14>T| |c92>G,A31>G| |a250C>g,T84C>A| |t312>c| | ||
TRAV6D-7 | F | TRAV6D-7*01 | 129/SvJ | AC005855 |   | t76 |t126 |g147 |a305 ,Y102 |t312 | | |
(F) | TRAV6D-7*02 | PL x SJL (F1) | M21205 | + | |t312>c| | ||
(F) | TRAV6D-7*03 | DBA/2 | X55823 |   | t76>a|t126>c|g147>t|a305>g,Y102>C|t312>c| | ||
TRAV6-3 | F | TRAV6-3*01 | 129/SvJ | AC004407 | |||
TRAV6-4 | F | TRAV6-4*01 | 129/SvJ | AC004407 | + | t167 ,V56 |a251A ,K84A | | |
(F) | TRAV6-4*02 | BALB/c | M84653 |   | t167>a,V56>E|a251A>g,K84A>R| | ||
TRAV6-5 | F | TRAV6-5*01 | 129/SvJ | AC004405 | + | g39 |g206 ,S69 | | |
(F) | TRAV6-5*02 | BALB/c | M34202 | g39>a| | |||
(F) | TRAV6-5*03 | BALB/cJ | U05046 | |g206>a,S69>N| | |||
TRAV6-6 | F | TRAV6-6*01 | 129/SvJ | AC005240 | + | c27 |c28 ,Q10 |c36 |c39 |c77 ,S26 |c92 ,A31 |a253 ,c255 ,T85 |a285 |g288 |t312 | | |
(F) | TRAV6-6*02 | BALB/c | U21448 | c27>a|c28>a,Q10>K| |c39>t| | ,c255>g, |a285>g|g288>a| | |||
(F) | TRAV6-6*03 | C57BL/6 | U90513 | |c36>t| |c77>t,S26>L|c92>g,A31>G|a253>g, ,T85>A| |t312>c| | |||
TRAV6-7/DV9 | F | TRAV6-7/DV9*01 | 129/SvJ | AC003995 | + | g3 |t40 ,S14 |c81 |c83 |g94 ,t96 ,A32 |t126 |t128 ,V43 |a141 |g147 |t154 ,F52 |c162 |g234 |c243 |c249 |a250 ,N84 |a251B ,a252B ,E84B |c255 |a269 ,Q90 |c276 |a285 |g288 |g292 ,D98 |t302 ,V101 | | |
(F) | TRAV6-7/DV9*02 | C57BL/Ka | X02932 |   | g3>a| |t126>c| |g147>t| |c162>t|g234>t|c243>t|c249>t|a250>g,N84>D|a251B>g,a252B>g,E84B>G| |a269>g,Q90>R| | ||
(F) | TRAV6-7/DV9*03 | B10.PL | M21863 | g3>a| |c81>a| |t126>c| |g147>t| |c162>t|g234>t|c243>t|c249>t|a250>g,N84>D|a251B>g,a252B>g,E84B>G| |a269>g,Q90>R| | |||
(F) | TRAV6-7/DV9*04 | C57BL/6 | X13316 |   | |g94>a,t96>c,A32>T| |t154>c,F52>L|c162>t|g234>t|c243>t|c249>t|a250>g,N84>D|a251B>g,a252B>g,E84B>G| |a269>g,Q90>R|c276>t| | ||
(P) | TRAV6-7/DV9*05 | B10.PL | M35492 | g3>a| |c83>del#| |t126>c|t128>a,V43>E|a141>g|g147>t| |c162>t|g234>t|c243>t|c249>t|a250>g,N84>D|a251B>g,a252B>g,E84B>G| |a269>g,Q90>R| | |||
(P) | TRAV6-7/DV9*06 | C57BL/10 | X52448 | g3>a|   |g147>t| |c162>t|g234>t|c243>t|c249>t|a250>g,N84>D|a251B>g,a252B>g,E84B>G| |a269>g,Q90>R| | |||
(F) | TRAV6-7/DV9*07 | BALB/c | U21453 | |t40>a,S14>T| |g292>t,D98>Y| | |||
(F) | TRAV6-7/DV9*08 | BALB/c | U21409 | + | |t40>a,S14>T| |c255>g| |a285>g|g288>a| | ||
(F) | TRAV6-7/DV9*09 | C57BL/6 x BALB/c (F1) | D12899 | |t302>g,V101>G| | |||
TRAV7 | TRAV7-1 | F | TRAV7-1*01 | 129/SvJ | AF259071 | + | |
TRAV7D-2 | F | TRAV7D-2*01 | 129/SvJ | AF259071 | g3 |a243 |a251A ,K84A |c279 ,D93 |c282 |g285 |c301 ,L101 | | ||
(F) | TRAV7D-2*02 | B10.A | M38104 |   | g3>a|a243>t| | ||
(F) | TRAV7D-2*03 | BALB/c | X83009 |   | |a251A>g,K84A>R|c279>g,D93>E|c282>g|g285>a|c301>g,L101>V| | ||
TRAV7D-3 | F | TRAV7D-3*01 | C57BL/10 | X02833 | + | t161 ,M54 |g264 |a267 | | |
(F) | TRAV7D-3*02 | B10.A x AKR | M26423 | t161>c,M54>T|g264>c|a267>g| | |||
TRAV7D-4 | F | TRAV7D-4*01 | C57BL/6 | X56723 | + | g46 ,a48 ,G16 |c96 |g153 |a165 | | |
F | TRAV7D-4*02 | 129/SvJ | AC003994 | + | |a165>c| | ||
(F) | TRAV7D-4*03 | C57BL/Ka | X02928 | + | g46>a,a48>c,G16>S| |a165>c| | ||
(F) | TRAV7D-4*04 | C57BL/6 | X56722 |   | |c96>t|g153>a|a165>c| | ||
TRAV7D-5 | F | TRAV7D-5*01 | 129/SvJ | AC004101 |   | ||
TRAV7D-6 | F | TRAV7D-6*01 | 129/SvJ | AC005855 |   | ||
TRAV7-2 | F | TRAV7-2*01 | 129/SvJ | AC004407 | |||
TRAV7-3 | F | TRAV7-3*01 | 129/SvJ | AC004407 | + | a27 ,E9 |g210 |t306 | | |
(F) | TRAV7-3*02 | BALB/c | L16803 | |g210>c|t306>c| | |||
(F) | TRAV7-3*03 | SJL | AF037038 | a27>c,E9>D| | |||
TRAV7-4 | F | TRAV7-4*01 | 129/SvJ | AC004407 | + | ||
TRAV7-5 | F | TRAV7-5*01 | 129/SvJ | AC004406 | + | g140 ,G47 |t155 ,g156 ,V52 |a159 |g160 ,V54 |a234 ,R78 |c246 ,H82 |c247 ,L83 |g251C ,S84C |c253 |c263 ,S88 |g279 |g282 |g301 ,V101 |a316 ,M106 | | |
F | TRAV7-5*02 | C57BL/6 | X56724 |   | |a159>g| |a234>t,R78>S| |c263>t,S88>F| |g301>c,V101>L|a316>g,M106>V| | ||
(F) | TRAV7-5*03 | DBA/2 | X55825 | + | |t155>c,g156>a,V52>A|a159>g|g160>a,V54>M| |c246>g,H82>Q|c247>g,L83>V| | ||
(F) | TRAV7-5*04 | C57BL/6 | AF034160 |   | g140>c,G47>A| |g251C>a,S84C>N|c253>t| |g279>a|g282>a| | ||
TRAV7-6 | F | TRAV7-6*01 | 129/SvJ | AC003995 |   | c56 ,A19 |c71 ,T24 |a79 ,N27 |g151 ,E51 |a168 |g275 ,R92 |c290 ,T97 |c300 |a301 ,I101 | | |
(F) | TRAV7-6*02 | C57BL/6 | X63927 | + | c56>t,A19>V|c71>g,T24>S|a79>g,N27>D|g151>a,E51>K|a168>c|g275>a,R92>K|c290>g,T97>S|c300>t|a301>g,I101>V| | ||
TRAV8 | TRAV8D-1 | F | TRAV8D-1*01 | 129/SvJ | AC003994 | + | a77 ,K26 | |
(F) | TRAV8D-1*02 | B10.BR | X06773 |   | a77>c,K26>T| | ||
TRAV8D-2 | F | TRAV8D-2*01 | 129/SvJ | AC005855 | t155 ,L52 |a157 ,I53 | | ||
(F) | TRAV8D-2*02 | B10.BR | U46581 | + | t155>a,L52>Q|a157>c,I53>L| | ||
TRAV8-1 | F | TRAV8-1*01 | 129/SvJ | AC004407 | + | a271 ,I91 | | |
(F) | TRAV8-1*02 | C57BL/10 | D16605 | a271>g,I91>V| | |||
TRAV8-2 | F | TRAV8-2*01 | 129/SvJ | AC004096 | |||
TRAV9 | TRAV9D-1 | F | TRAV9D-1*01 | 129/SvJ | AC003994 | + | g143 ,R48 |c279 | |
(F) | TRAV9D-1*02 | C57BL/6 | M16678 | g143>a,R48>H|c279>t| | |||
TRAV9D-2 | F | TRAV9D-2*01 | BALB/c | U31877 | a152 ,Q51 |t210 |a263 ,c264 ,H88 |c266 ,P89 |g297>a|c299 ,t300 ,A100 | | ||
F | TRAV9D-2*02 | 129/SvJ | AC005402 | |t210>c| | |||
(F) | TRAV9D-2*03 | BALB/c | M33586 | a152>t,Q51>L|t210>c| | |||
(P) | TRAV9D-2*04 | BALB/c | L16799 | a152>t,Q51>L|t210>c|a263>c,c264>a,H88>P|c266>t,P89>L|g297>a|c299>del#,t300>c,A100>del| | |||
TRAV9D-3 | F | TRAV9D-3*01 | 129/SvJ | AC005402 | + | a154 ,M52 |t174 |g232 ,G78 |c252B |g250C ,D84C |g269 ,R90 |c279 | | |
(F) | TRAV9D-3*02 | C57BL/10 | X05732 | + | a154>c,M52>L|t174>a|g232>a,G78>S|c252B>t|g250C>a,D84C>N|g269>a,R90>Q|c279>t| | ||
TRAV9D-4 | F | TRAV9D-4*01 | 129/SvJ | AC005855 | + | a15 |c83 ,S28 |g90 |t172 ,c174 ,S58 |g251 ,S84 |c279 |c296 ,S99 | | |
(F) | TRAV9D-4*02 | C57BL/6 | X05734 | + | a15>g|c83>t,S28>F|g90>a|t172>c,c174>a,S58>P|  |c279>t|c296>g,S99>W| | ||
(F) | TRAV9D-4*03 | C57BL/6 | X56716 | |c279>t| | |||
(F) | TRAV9D-4*04 | C57BL/6 | M87852 | + | |g251>t,S84>I|c279>t| | ||
TRAV9-1 | F | TRAV9-1*01 | 129/SvJ | AC004405 | |||
TRAV9-2 | F | TRAV9-2*01 | BALB/c | U26917 | + | ||
TRAV9-3 | F | TRAV9-3*01 | BALB/c | U31878 | + | g15 |a131 ,Q44 | | |
(F) | TRAV9-3*02 | BALB/c | M34194 | |a131>t,Q44>L| | |||
(F) | TRAV9-3*03 | BALB/cJ | U05047 | g15>a| | |||
TRAV9-4 | F | TRAV9-4*01 | BALB/c | X02857 | + | ||
TRAV10 | TRAV10D | F | TRAV10D*01 | 129/SvJ | AC003994 | + | c22 ,Q8 | |
(P) | TRAV10D*02 | C57BL/6 | U46077 |   | c22>g,Q8>E| | ||
TRAV10 | F | TRAV10*01 | 129/SvJ | AC005240 | + | c21 |g33 |g41 ,R14 |t87 |g145 ,G49 |a200 ,K67 |c270 | | |
(F) | TRAV10*02 | C57BL/6 | L34678 | + | c21>t| |g145>a,G49>S| | ||
(F) | TRAV10*03 | C57BL/6 | U47051 |   | c21>t|g33>t|g41>a,R14>Q| |c270>t| | ||
(P) | TRAV10*04 | C57BL/6 | U46078 |   | |t87>c|g145>a,G49>S|a200>g,K67>R| | ||
(P) | TRAV10*05 | C57BL/6 | U46079 |   | |t87>c|g145>a,G49>S| | ||
TRAV11 | TRAV11D | F | TRAV11D*01 | 129/SvJ | AC004101 | + | |
TRAV11 | F | TRAV11*01 | 129/SvJ | AC005240 | + | t42 |c75 ,Y25 |c156 |c172 ,t174 ,H58 |g175 ,E59 |t180 ,N60 |t207 |a251A ,K84A | | |
F | TRAV11*02 | B10.A | AY158218 | + | |c172>g,t174>c,H58>D|g175>c,E59>Q|t180>a,N60>K| | ||
P | TRAV11*03 | B10.A | AY158219 | t42>g|c75>g,Y25>*|c156>a| ,t174>c, |g175>c,E59>Q|t180>a,N60>K|t207>c|a251A>g,K84A>R| | |||
TRAV12 | TRAV12D-1 | F | TRAV12D-1*01 | C57BL/6 | X06308 | + | c6 |c9 |t89 ,L30 |c92 ,T31 |a132 |a163 ,a164 ,K55 |c207 ,H69 |c208 ,Q70 |a279-c281 ,A94 | |
F | TRAV12D-1*02 | 129/SvJ | AC004101 | + | |a163>c,a164>g,K55>R| | ||
(F) | TRAV12D-1*03 | C57BL/Ka | X02936 | |a132>g| |a279-c281>del(3nt),A94>del| | |||
(F) | TRAV12D-1*04 | C57BL/6 | X60320 | c6>t| |c207>g,H69>Q|c208>g,Q70>E| | |||
(F) | TRAV12D-1*05 | C57BL/6 | U90515 | |c9>a|t89>c,L30>S|c92>a,T31>N| | |||
TRAV12D-2 | F | TRAV12D-2*01 | C57BL/6 | X04332 | + | t9 |c28 |g43 ,E15 |g80 ,S27 |t124 ,Y42 |t159 |t160 ,g162 ,L54 |t170 ,F57 |c199 ,P67 |c238 ,H80 |c281 ,A94 |a308 ,Y103 | | |
F | TRAV12D-2*02 | C57BL/6 | X06306 | + | t9>a| |g43>a,E15>K|g80>c,S27>T| |t159>c|t160>c |t170>c,F57>S|c199>a,P67>T|c238>t,H80>Y|c281>t,A94>V|a308>t,Y103>F| | ||
(F) | TRAV12D-2*03 | C57BL/6 | X04330 | | ,g162>c,L54>F| | |||
(F) | TRAV12D-2*04 | BALB/c | M15063 | t9>a|c28>t|g43>a,E15>K|g80>c,S27>T| |t159>c|t160>c |t170>c,F57>S|c199>a,P67>T|c238>t,H80>Y|c281>t,A94>V|a308>t,Y103>F| | |||
(F) | TRAV12D-2*05 | BALB/c | M98569 | |g43>a,E15>K|g80>c,S27>T|t124>c,Y42>H|t159>c|t160>c |t170>c,F57>S|c199>a,P67>T|c238>t,H80>Y|c281>t,A94>V|a308>t,Y103>F| | |||
TRAV12D-3 | F | TRAV12D-3*01 | C57BL/6 | X06305 | c41 ,a42 ,T14 |a45 |t67 ,C23 |c94 ,P32 |t98 ,F33 |a132 ,Q44 |c133 ,H45 |c151 ,R51 |a163 ,a164 ,K55 |g167 ,S56 |t170 ,F57 |t260 ,F87 |a308 ,Y103 |c316 | | ||
F | TRAV12D-3*02 | 129/SvJ | AC005402 | |c94>g,P32>A| |a132>c,Q44>H|c133>t,H45>Y|c151>t,R51>W|a163>c,a164>g,K55>R| |t170>c,F57>S| |c316>t| | |||
(F) | TRAV12D-3*03 | BALB/c | M34210 | c41>a,a42>c,T14>N|a45>g| |c94>g,P32>A| |a132>c,Q44>H|c133>t,H45>Y|c151>t,R51>W|a163>c,a164>g,K55>R| |t170>c,F57>S| | |||
(ORF) | TRAV12D-3*04 | C57BL/6 | U90514 | |t67>a,C23>S| |t98>a,F33>Y| |g167>a,S56>N| |t260>c,F87>S|a308>g,Y103>C| | |||
TRAV12-1 | F | TRAV12-1*01 | C57BL/6 | X06307 | g37 ,V13 |t59 ,M20 |g82 ,A28 |c98 ,A33 |t133 ,t135 ,Y45 |c160 |c278 ,a279 ,S93 |t281 ,V94 |c299 ,A100 |a308 ,Y103 |c316 | | ||
F | TRAV12-1*02 | Std:ddY | X17173 | |g82>a,A28>T| | ,t135>c, |c160>t|c278>a,a279>c,S93>Y|t281>c,V94>A|c299>g,A100>G| |c316>t| | |||
ORF | TRAV12-1*03 | 129/SvJ | AC004406 | g37>c,V13>L|t59>a,M20>K| |t133>c, ,Y45>H| |a308>t,Y103>F|c316>t| | |||
(F) | TRAV12-1*04 | C57BL/6 | M16677 | |t133>c, ,Y45>H| |a308>t,Y103>F| | |||
(F) | TRAV12-1*05 | C57BL/Ka | M38680 | |c98>g,A33>G| | |||
TRAV12-2 | F | TRAV12-2*01 | 129/SvJ | AC003997 | + | ||
TRAV12-3 | F | TRAV12-3*01 | 129/SvJ | AC003997 | + | a9 |g31 ,V11 |t83 ,I28 |a91 ,N31 |t98 ,F33 |c115 ,L39 |c132 ,H44 |t133 ,Y45 |c151 |t154 |a164 ,K55 |c205-207 ,H69 |c286-g288 ,L96 | | |
(F) | TRAV12-3*02 | Std:ddY | X17181 | a9>c|g31>a,V11>I|t83>c,I28>T| |t98>c,F33>S|c115>t,L39>F|c132>a,H44>Q|t133>c,Y45>H| |t154>c|a164>g,K55>R|c205-c207>del(3nt)#,H69>del|c286-g288>del(3nt)#,L96>del| | |||
(F) | TRAV12-3*03 | DBA/2 | X67432 | |t154>c| | |||
(F) | TRAV12-3*04 | BALB/c | U21399 | + | |a91>c,N31>H| |c151>a| | ||
TRAV13 | TRAV13D-1 | F | TRAV13D-1*01 | 129/SvJ | AC005402 | + | t24 |a27 |c129 |g204 ,Q68 | |
(F) | TRAV13D-1*02 | B10.S/9R | M20875 | t24>c|a27>g| |g204>t,Q68>H| | |||
(F) | TRAV13D-1*03 | BALB/c | M34216 | |c129>t| | |||
TRAV13D-2 | F | TRAV13D-2*01 | Std:ddY | X17178 | + | c54 |c86 ,A29 |c287 ,a288 ,T96 | | |
(F) | TRAV13D-2*02 | BALB/c | U21415 | c54>t|c86>t,A29>V|c287>t,a288>c,T96>I| | |||
TRAV13D-3 | F | TRAV13D-3*01 | 129/SvJ | AC005855 | |||
TRAV13D-4 | F | TRAV13D-4*01 | 129/SvJ | AC005855 | a27 |g47 ,G16 |c63 |a246 | | ||
(F) | TRAV13D-4*02 | B10.S/9R | M20876 | + | a27>g|g47>c,G16>A|c63>g|a246>t| | ||
TRAV13-1 | F | TRAV13-1*01 | 129/SvJ | AC004406 | + | ||
TRAV13-2 | F | TRAV13-2*01 | 129/SvJ | AC003997 | t21 |t25 ,S9 | | ||
(F) | TRAV13-2*02 | B10.A | M38102 | + | t21>c|t25>g,S9>A| | ||
TRAV13-3 | F | TRAV13-3*01 | 129/SvJ | AC003995 | c54 |g246 |g285 ,Q95 | | ||
ORF | TRAV13-3*02 | Std:ddY | X17176 | + | c54>t|g246>c|g285>t,Q95>H| | ||
TRAV13-4/DV7 | F | TRAV13-4/DV7*01 | 129/SvJ | AC003996 | c13 ,Q5 |t24 |a27 |c54 ,N18 |c91 ,Q31 |a92 ,Q31 |c133 ,R45 |c147 ,S49 |a164 ,Y55 |c204 ,H68 |c206 ,T69 |a210 |c239 ,T80 |c246 |c251A ,T84A |a259 ,S87 |t307 ,F103 | | ||
(F) | TRAV13-4/DV7*02 | C57BL/6 | M26299 | |a92>g,Q31>R| |a164>c,Y55>S| |a259>g,S87>G|t307>c,F103>L| | |||
(F) | TRAV13-4/DV7*03 | SWR x NZB (F1) | U07879 | c13>g,Q5>E|t24>c|a27>g|c54>a,N18>K|c91>g,Q31>E| |c133>a,R45>S|c147>a,S49>R| |c204>g,H68>Q|c206>g,T69>S|a210>g|c239>t,T80>I|c246>a|c251A>t,T84A>I| |t307>c,F103>L| | |||
TRAV13-5 | F | TRAV13-5*01 | 129/SvJ | AC005938 | |||
TRAV14 | TRAV14D-1 | F | TRAV14D-1*01 | B10.A | L77149 | + | g123 ,W41 |c242 ,T81 | |
ORF | TRAV14D-1*02 | BALB/c | U04623 | + | g123>c,W41>C|c242>t,T81>I| | ||
TRAV14D-2 | F | TRAV14D-2*01 | BALB/c | U04312 | + | g139 ,G47 |a142 ,K48 | | (F) | TRAV14D-2*02 | CBA/J | M88352 | g139>a,G47>R|a142>g,K48>E| |
TRAV14D-3/DV8 | F | TRAV14D-3/DV8*01 | B10.A | L77152 | + | t22 ,S8 |g41 ,W14 |c54 |g55 ,A19 |g63 |c119 ,P40 |g163 ,c164 ,A55 |t171 |c232 ,R78 |a253 ,K85 |t258 ,N86 |a275 ,K92 |c303 |c309 | | |
F | TRAV14D-3/DV8*02 | B10.A | L77151 | + | t22>c,S8>P| |g63>a| |t258>g,N86>K|a275>c,K92>T|c303>t| | ||
F | TRAV14D-3/DV8*03 | BALB/c | U04624 | + | t22>c,S8>P| |c232>g,R78>G| | ||
(F) | TRAV14D-3/DV8*04 | C57BL/10 | U07557 | |c54>a| |g63>a| |t258>g,N86>K|a275>c,K92>T|c303>t| | |||
(F) | TRAV14D-3/DV8*05 | SWR x NZB (F1) | U07872 | t22>c,S8>P| |c119>t,P40>L|g163>t,c164>t,A55>F|t171>a| |a253>c,K85>Q|t258>g,N86>K|a275>t,K92>T| |c309>t| | |||
(F) | TRAV14D-3/DV8*06 | SWR x NZB (F1) | U07875 | t22>c,S8>P| |c119>t,P40>L| |t171>a| |a253>c,K85>Q|t258>g,N86>K|a275>t,K92>T| |c309>t| | |||
(F) | TRAV14D-3/DV8*07 | C57BL/6 x DBA/2 (F1) | AF126457 | t22>c,S8>P|g41>c,W14>S| |g55>a,A19>T| |t258>g,N86>K|a275>c,K92>T| | |||
TRAV14-1 | F | TRAV14-1*01 | B10.A | L77150 | + | c54 |g132 ,Q44 |c169 ,R57 |t300 | | |
F | TRAV14-1*02 | BALB/c | U04622 | c54>a| |c169>a,R57>S|t300>c| | |||
(F) | TRAV14-1*03 | BALB/c | AJ311368 | c54>a|g132>c,Q44>H|c169>a,R57>S|t300>c| | |||
TRAV14-2 | F | TRAV14-2*01 | B10.A | L77148 | + | t127 ,g128 ,g129 ,W43 |a131 ,Q44 |a139 ,R47 |c259 ,L87 |a274 ,T92 |t300 | | |
F | TRAV14-2*02 | B10.A | L77153 | + | t127>c,g128>a,g129>t,W43>H| |a139>g,R47>G|c259>t,L87>F|a274>g,T92>A|t300>c| | ||
F | TRAV14-2*03 | BALB/c | U04625 | + | t127>c, ,g129>t,W43>R|a131>t,Q44>L|a139>g,R47>G| | ||
TRAV14-3 | F | TRAV14-3*01 | B10.A | L77154 | + | g41 ,W14 |g55 ,A19 |g181 ,D61 | | |
F | TRAV14-3*02 | BALB/c | U04626 | + | |g181>a,D61>N| | ||
(F) | TRAV14-3*03 | C57BL/6 x DBA/2 (F1) | AF126459 | g41>c,W14>S|g55>a,A19>T| | |||
TRAV15 | TRAV15D-1/DV6D-1 | F | TRAV15D-1/DV6D-1*01 | BALB/c | X07878 |   | c4 ,Q2 |a17 ,Q6 |g19 ,V7 |c31 ,P11 |g52 ,E18 |c60 |c66 |g76 ,E26 |t84 ,S28 |t137 ,L46 |c156 ,F52 |t170 ,g171 ,M57 |t172 ,S58 |t178 ,S60 |c182 ,T61 |a197 ,K66 |a205 ,g206 ,S69 |t251C ,L84C |g268 ,V90 |g277 ,A93 |c279 |c291 |g297 | |
F | TRAV15D-1/DV6D-1*02 | 129/SvJ | AC005402 | + | |c31>g,P11>A| | ||
(F) | TRAV15D-1/DV6D-1*03 | C57BL/Ka | X02935 |   | c4>g,Q2>E| |c31>g,P11>A| |t170>c, ,M57>T| |g268>a,V90>I| |c279>t| | ||
(F) | TRAV15D-1/DV6D-1*04 | C57BL/6 | X17225 | + | c4>g,Q2>E| |c31>a,P11>T|g52>a,E18>K|c60>a|c66>t|g76>a,E26>K| |c156>g,F52>L| |t172>c,S58>P|t178>a,S60>T|c182>t,T61>I|a197>t,K66>I|a205>g,g206>a,S69>D|t251C>g,L84C>R| |g277>a,A93>T| | ||
(F) | TRAV15D-1/DV6D-1*05 | DBA/2 | U66666 |   | c4>g,Q2>E| |c31>g,P11>A| |t170>c,g171>a,M57>T| |c291>t| | ||
(F) | TRAV15D-1/DV6D-1*06 | DBA/2 | U66667 |   | |a17>g,Q6>R|g19>a,V7>I|c31>g,P11>A| |t84>a,S28>R|t137>a,L46>H| |t170>c, ,M57>T| |g297>a| | ||
(F) | TRAV15D-1/DV6D-1*07 | DBA/2 | U66668 |   | |c31>g,P11>A| |t170>c, ,M57>T| | ||
TRAV15D-2/DV6D-2 | F | TRAV15D-2/DV6D-2*01 | 129/SvJ | AC005402 | + | c25 ,P9 |g32 ,c33 ,G11 |t60 |t92 ,F31 |t97 ,g98 ,C33 |a118 ,I40 |a169 ,T57 |c174 |t180 |a206 ,N69 |c250C ,L84C | | |
(F) | TRAV15D-2/DV6D-2*02 | B10.A | AJ271435 | |g32>c,c33>g,G11>A|t60>c| |t97>c, ,C33>R|a118>t,I40>F|a169>c,T57>P|c174>t|t180>c|a206>g,N69>S|c250C>T,L84C>F| | |||
(F) | TRAV15D-2/DV6D-2*03 | C57BL/6 | AF085009 | |t60>c| |t97>c, ,C33>R|a118>t,I40>F|a169>c,T57>P|c174>t|t180>c|a206>g,N69>S|c250C>T,L84C>F| | |||
(F) | TRAV15D-2/DV6D-2*04 | DBA/2 | AF085006 | c25>t,P9>S| |t60>c| |t97>c, ,C33>R| |a206>g,N69>S| | |||
(F) | TRAV15D-2/DV6D-2*05 | DBA/2 | AF085008 | c25>t,P9>S| |t60>c|t92>c,F31>S|t97>c,g98>t,C33>L|a118>c,I40>L|a169>c,T57>P|c174>t| |a206>g,N69>S|c250C>T,L84C>F| | |||
TRAV15-1/DV6-1 | F | TRAV15-1/DV6-1*01 | 129/SvJ | AC004406 | + | c48 | | |
(F) | TRAV15-1/DV6-1*02 | BALB/c | X63939 | + | c48>a| | ||
TRAV15-2/DV6-2 | F | TRAV15-2/DV6-2*01 | 129/SvJ | AC003997 | + | a8 ,K3 |t60 |c64 ,H22 |t92 ,F31 |g97 ,V33 |a128 ,K43 |a169 ,T57 |c174 |a206 ,N69 |a208 ,S70 |g233 ,R78 |c250C ,L84C | | |
(F) | TRAV15-2/DV6-2*02 | C57BL/6 | AF085010 | a8>g,K3>R|t60>c|c64>g,H22>D|t92>c,F31>S|g97>c,V33>L|a128>g,K43>R|a169>c,T57>P|c174>t|a206>g,N69>S|a208>g,S70>G|g233>a,R78>H|c250C>t,L84C>F| | |||
TRAV16 | TRAV16D/DV11 | F | TRAV16D/DV11*01 | 129/SvJ | AC005855 | + | a40 ,M14 |a83 ,Q28 |t206 ,g207 ,V69 |c276 | |
(F) | TRAV16D/DV11*02 | C57BL/6 | M16118 | + | a40>g,M14>V|a83>g,Q28>R| | ||
(F) | TRAV16D/DV11*03 | C57BL/6 | M16119 | |a83>g,Q28>R|t206>a,g207>a,V69>E|c276>t| | |||
TRAV16 | F | TRAV16*01 | 129/SvJ | AC004096 | + | c29 ,S10 |a83 ,Q28 |c87 ,D29 |t98 ,F33 |g145 ,E49 |a160 ,I54 |t165 |a176 ,Y59 |a178 ,K60 |t238 ,S80 |g277 ,A93 | | |
(F) | TRAV16*02 | SWR x NZB (F1) | U07873 | |g145>a,E49>K| | |||
(F) | TRAV16*03 | NOD | S69341 | |a83>g,Q28>R|c87>a,D29>E|t98>a,F33>Y|g145>a,E49>K|a160>c,I54>L|t165>c|a176>g,Y59>C|a178>g,K60>E|t238>c,S80>P|g277>a,A93>T| | |||
(F) | TRAV16*04 | CBA | S73533 | |a83>g,Q28>R|c87>a,D29>E|t98>a,F33>Y|g145>a,E49>K| |g277>a,A93>T| | |||
(F) | TRAV16*05 | C57BL/6 x DBA/2 | AF118105 | c29>t,S10>L|a83>g,Q28>R|c87>a,D29>E|t98>a,F33>Y| | |||
TRAV17 | TRAV17 | F | TRAV17*01 | 129/SvJ | AC005938 | + | c30 |a41 ,Y14 |g181 ,A61 | |
(F) | TRAV17*02 | C57BL/6 | X60319 |   | c30>t|a41>c,Y14>S|g181>a,A61>T| | ||
TRAV18 | TRAV18 | ORF | TRAV18*01 | 129/SvJ | AC005938 | ||
TRAV19 | TRAV19 | F | TRAV19*01 | 129/SvJ | AE008686 | + | c4 ,Q2 |a15 |c26 ,P9 |g37 ,V13 |t56 ,g57 ,L19 |t72 |g78 ,E26 |g139 ,D47 |c149 ,P50 |c165 |c169 ,R57 |g180 |g200 ,R67 |t235 ,F79 |g249 ,L83 |c252B |t260 ,F87 |t262-t272 ,S88-I91 |c312 ,C104 |g320 ,G107 | |
P | TRAV19*02 | BALB/c | X72903 |   | c4>t,Q2>*|a15>g|c26>t,P9>L|g37>a,V13>I|t56>c,g57>t,L19>S|t72>c|g78>t,E26>D|g139>t,D47>Y|c149>g,P50>R|c165>t|c169>t,R57>C|g180>a|g200>a,R67>K| |g249>c,L83>F|c252B>t|t260>g,F87>C|t262-t272>del(11nt)#,S88-I91>del(4AA)#|c312>a,C104>*|g320>t,G107>V| | (F) | TRAV19*03 | C57BL/6 | AF171639 | |t56>c, ,L19>S|t72>c| |t235>c,F79>L| |
TRAV21 | TRAV21/DV12 | F | TRAV21/DV12*01 | BALB/c | M94080 | + | c156 |t266 ,L89 |a274 ,T92 | |
(F) | TRAV21/DV12*02 | C57BL/Ka | X02934 |   | c156>t|t266>c,L89>S|a274>c,T92>P| |
(1) | A, B or C are indicated as a superscript for the positions of the additional amino acids 84A, 84B and 84C. The A, B and C superscripts are also used to characterize the positions of the mutated nucleotides in the corresponding codons (ex: 250A, 251A and 252A for 84A codon). |
Created: 29/03/2001
Last updated: Wednesday, 12-Jun-2024 16:02:42 CEST
Author: Nathalie Bosc