Assignment of rearranged cDNAs and gDNAs to germline genes: Mouse (Mus musculus) IGKV

In this table are listed representative rearranged complementary DNAs (cDNAs) and genomic DNAs (gDNAs).

Rearranged cDNAs (#c) and gDNAs (#g) IGKV sequences have been assigned to IMGT IGKV genes and alleles as described in Germline gene tables, Alignments of alleles and Tables of alleles. Assignments were performed using IMGT/V-QUEST.

IGKV subgroup Reference sequences (1) Rearranged cDNAs and gDNAs
IGKV gene and allele name Accession numbers Strain Accession numbers Number of nucleotide differences (2)
1 1-88*01 AJ231206 BALB/c M64152 [28]#c 0
1-99*01 AJ231207 BALB/c U29595 [47]#c 0
1-110*01 D00080/M15566   S54757 [38]#c 0
1-110*02 M28132   U62051 [52]#c 0
1-117*01 D00081   M83723 [33]#c 0
1-117*02 M28134   J04438 [18]#c 0
1-122*01 D00082 NZB Z22083 [34]#c 5
1-132*01 AJ231198   M34622 [23]#c 2
1-133*01 Z72382 BALB/c Z17401 [40]#c 0
1-135*01 Z72384   M25996 [17]#c 0
2 2-109*01 AJ132683   S74547 [45]#c 0
2-109*02 K02418      
2-112*01 J00562   J00553 [2]#g 0
BALB/c M19910 [12]#c 2
2-137*01 AJ231263 C57BL/6 AF045509 [63]#c 0
2-a*01 K02417      
3 3-1*01 X16955 MRL L18942 [31]#c 5
3-2*01 X16954   M83099 [30]#c 0
3-3*01 K02162      
3-4*01 Y15968 C57BL/6 AF045518 [63]#c 0
3-5*01 K02161   M21522 [3]#c 0
3-7*01 K02158 NZB X63815 [32]#c 2
3-9*01 Y15972      
3-10*01 K02160 NZB Z22079 [34]#c 0
3-12*01 K02159 NIH X13938 [13]#g 0
A.TH U39824 [43]#c 1
4 4-50*01 AJ235938 BALB/c M19912 [12]#c 3
4-51*01 V01565      
4-52*01 AJ239198      
4-53*01 AJ231231 NZB U60468 [56]#c 0
4-54*01 AJ231223      
4-55*01 AJ231225 BALB/c M19906 [12]#c 4
4-57*01 AJ231221 CB-20 AF021872 [55]#c 0
4-58*01 K00884 BALB/c AF163747 [59]#c 0
4-59*01 S37664   M34586 [14]#c 0
4-61*01 AJ231209 BALB/c X59197 [29]#c 0
4-63*01 AJ231211 NZB M20464 [10]#c 3
4-68*01 AJ231222   S61341 [37]#c 0
4-69*01 AJ235942 BALB/c AF007240 [62]#c 3
4-70*01 AJ235943 BALB/c AF104469 [62]#c 0
4-71*01 AJ231218      
4-72*01 AJ231219 BALB/c M64153 [28]#c 0
4-73*01 AJ231216      
4-74*01 AJ231217 NZB Z22050 [34]#c 0
4-78*01 AJ231212      
4-79*01 AJ231214 NZB Z22108 [34]#c 3
4-80*01 AJ231213 MRL X65009 [39]#c 5
4-81*01 AJ231215      
4-86*01 X05555 BALB/c X05554 [6]#c 0
4-90*01 AJ231224 C3H X14098 [11]#c 1
4-91*01 AJ231229 C3H X14099 [11]#c 0
4-92*01 AJ231226      
5 5-37*01 AJ235963 BALB/c Z17400 [40]#c 1
5-39*01 AJ235964   S82437 [50]#c 0
5-43*01 AJ235973   M34528 [21]#c 0
5-45*01 AJ235974 BALB/c X86546 [51]#c 0
5-48*01 V01564 C3H X70264 [41]#c 0
6 6-13*01 J00569#g   D85126 [58]#c 3
6-14*01 Y15975 BALB/c X91669 [60]#c 0
6-15*01 Y15976 BALB/c AF163759 [59]#c 1
6-17*01 Y15978   M36250 [20]#c 0
6-20*01 Y15981   M31259 [9]#c 3
6-23*01 AJ235961 C57BL/6 AF045512 [63]#c 0
6-25*01 AJ235962 BALB/c AF004328 [57]#c 0
6-29*01 AJ235967      
6-32*01 AJ235968 C57BL/6 AF045513 [63]#c 0
6-32*02 M14360      
6-b*01 M14361 MRL X14622 [16]#c 0
6-c*01 M24937      
6-d*01 L36249      
7 7-33*01 AF044198 CBA U29423 [53]#c 1
8 8-16*01 Y15977      
8-19*01 Y15980   M34743 [19]#c 0
8-21*01 Y15982 CBA U62050 [52]#c 0
8-24*01 AJ235944 NZB Z22037 [34]#c 0
8-27*01 AJ235946 BALB/c X59193 [29]#c 0
8-28*01 AJ235947   M17488 [5]#c 0
8-28*02 L17135      
8-30*01 AJ235948   M34634 [23]#c 0
8-34*01 AJ235958      
9 9-120*01 V00804 C57BL/6 AF045508 [63]#c 1
9-123*01 AF003295   U20061 [44]#c 0
9-124*01 AF003294   X02177 [4]#c 2
9-129*01 K00880   M12191 [1]#c 1
10 10-94*01 M54906   M36261 [20]#c 0
10-94*02 M54908      
10-94*03 M54904      
10-95*01 AF029261   M18407 [8]#c 1
10-96*01 M15520   M20281 [15]#c 0
10-96*02 M54907      
10-96*03 M54903      
11 11-125*01 AJ231256   U21579 [49]#c 0
12 12-38*01 AJ235951 A.SW U78500 [54]#c 1
12-41*01 AJ235953 BALB/c L24555 [42]#c 0
12-41*02 V00778      
12-44*01 AJ235955   S61689 [35]#c 0
12-46*01 AJ235956 BALB/c U29621 [47]#c 0
12-89*01 AJ235950 BALB/c X59181 [29]#c 0
12-98*01 AJ235949   Y13991 [22]#c 2
12-e*01 J00546      
13 13-84*01 AJ231273   M35157 [26]#c 4
13-85*01 AJ231274 BALB/c U29631 [47]#c 3
13-85*02 M35154      
13-85*03 M35155      
14 14-100*01 AJ231243 BALB/c U18586 [48]#c 0
14-111*01 V01563 MRL U27013 [36]#g 1
BALB/c L14736 [34]#c 2
14-130*01 AJ231241 BALB/c X96756 [61]#c 3
15 15-103*01 AJ231269 MRL U27011 [36]#g 0
  M34636 [23]#c 2
16 16-104*01 AJ235936 MRL X14621 [7]#c 0
17 17-121*01 AJ231258   M55318 [25]#c 0
17-127*01 AJ231259 BALB/c X16678 [27]#g 0
  S75956 [46]#c 0
18 18-36*01 AJ235966      
19 19-93*01 AJ235935   M57588 [24]#c 0
#c: rearranged cDNA, #g: rearranged genomic DNA.

IMGT notes:
(1) Only functional genes are listed.
(2) Number of nucleotide differences in the V-REGION by comparison with the corresponding germline IGKV reference sequence.
cDNAs or gDNAs are shown only if sequences have less than 5 nucleotide differences with the corresponding germline IGKV reference sequence.

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Created: 16/05/2001
Author: Christèle Martinez-Jean