IMGT Repertoire (IG and TR)


Locus gene order: Atlantic salmon (Salmo salar) IGH locus on chromosome 6 (locus A - Salsal ssa06)

Relative position (order) of a gene, in a locus from the 5' end of a locus to its 3' end. The number '0' indicates that the relative position is unknown.

Atlantic salmon (Salmo salar) IGH locus on chromosome 6 (locus A - Salsal ssa06)

IMGT gene name IMGT locus gene order IMGT gene orientation in locus Copy Number Variation (CNV)
IGHV15-124 1 direct
IGHV11-123 2 direct
IGHV1-122 3 direct
IGHV16-121-1 4 direct
IGHV16-121 5 direct
IGHV15-120 6 direct
IGHV6-119 7 direct
IGHV11-118-1 8 direct
IGHV1-118 9 direct
IGHV1-117 10 direct
IGHV10-116 11 direct
IGHV8-115 12 direct
IGHV8-114-1 13 direct
IGHV6-114 14 direct
IGHV11-113 15 direct
IGHV12-112 16 direct
IGHV3-111 17 direct
IGHV16-110-1 18 direct
IGHV8-110 19 direct
IGHV10-109 20 direct
IGHV6-108-1 21 direct
IGHV11-108 22 direct
IGHV10-107 23 direct
IGHV8-106 24 direct
IGHV4-105-1 25 opposite
IGHT1 26 direct
IGHV8-105 27 direct
IGHV1-104 28 opposite
IGHV8-103 29 opposite
IGHV10-102 30 opposite
IGHV6-101 31 direct
IGHV1-100 32 direct
IGHV6-99 33 direct
IGHV1-98 34 direct
IGHV4-97 35 direct
IGHV1-96 36 direct
IGHV7-95 37 direct
IGHV4-94 38 direct
IGHV3-93 39 direct
IGHV2-92 40 direct
IGHV6-91 41 opposite
IGHV8-90 42 opposite
IGHV10-89 43 opposite
IGHV4-88 44 direct
IGHV1-87 45 direct
IGHV3-86-1 46 direct
IGHV9-86 47 direct
IGHV4-85 48 direct
IGHV5-84 49 direct
IGHV16-83 50 direct
IGHV5-82 51 direct
IGHD1T2 52 direct
IGHD2T2 53 direct
IGHJ1T2 54 direct
IGHJ2T2 55 direct
IGHT2 56 direct
IGHV4-81 57 direct
IGHV16-80 58 direct
IGHV1-79-1 59 direct
IGHV10-79 60 direct
IGHV8-78 61 direct
IGHV6-77 62 direct
IGHV9-76 63 direct
IGHV4-75 64 direct
IGHV7-74 65 direct
IGHV1-73 66 direct
IGHV4-72 67 direct
IGHJ1T3 68 direct
IGHJ2T3 69 direct
IGHT3 70 direct
IGHV4-71-1 71 direct
IGHV15-71 72 direct
IGHV1-70 73 direct
IGHV8-69 74 direct
IGHV6-68 75 direct
IGHV8-67 76 direct
IGHV8-66 77 opposite
IGHV10-65 78 opposite
IGHV6-64-1 79 direct
IGHV1-64 80 direct
IGHV6-63 81 direct
IGHV1-62 82 direct
IGHV3-61 83 direct
IGHV2-60 84 direct
IGHV6-59 85 opposite
IGHV8-58 86 opposite
IGHV10-57 87 opposite
IGHV4-56 88 direct
IGHV1-55 89 direct
IGHV1-54 90 direct
IGHV8-53 91 opposite
IGHV1-52 92 opposite
IGHV14-51 93 opposite
IGHV6-50 94 opposite
IGHV8-49 95 opposite
IGHV10-48 96 opposite
IGHV1-47 97 opposite
IGHV11-46 98 opposite
IGHV6-45 99 opposite
IGHV8-44-1 100 opposite
IGHV8-44 101 opposite
IGHV10-43 102 opposite
IGHV1-42 103 opposite
IGHV10-41 104 opposite
IGHV1-40 105 opposite
IGHV11-39 106 opposite
IGHV6-38 107 opposite
IGHV8-37 108 opposite
IGHV1-36 109 opposite
IGHV6-35 110 opposite
IGHV1-34 111 opposite
IGHV11-33 112 opposite
IGHV10-32 113 opposite
IGHV6-31 114 opposite
IGHV1-30 115 opposite
IGHV10-29 116 opposite
IGHV8-28 117 opposite
IGHV10-27 118 opposite
IGHV15-26 119 opposite
IGHV1-25-1 120 opposite
IGHV1-25 121 opposite
IGHV11-24-1 122 opposite
IGHV8-24 123 opposite
IGHV16-23 124 opposite
IGHV6-22 125 opposite
IGHV1-21 126 opposite
IGHV13-20 127 opposite
IGHV6-19 128 opposite
IGHV8-18-2 129 opposite
IGHV1-18-1 130 opposite
IGHV16-18 131 opposite
IGHD5T4 132 opposite
IGHD4T4 133 opposite
IGHD3T4 134 opposite
IGHV4-17 135 opposite
IGHT4 136 opposite
IGHJ2T4 137 opposite
IGHJ1T4 138 opposite
IGHD2T4 139 opposite
IGHD1T4 140 opposite
IGHV5-16 141 opposite
IGHV16-15 142 opposite
IGHV5-14 143 opposite
IGHV4-13 144 opposite
IGHV9-12 145 opposite
IGHV3-11-1 146 opposite
IGHV9-11 147 direct
IGHV1-10 148 direct
IGHV4-9 149 direct
IGHD1T5 150 direct
IGHJ1T5 151 direct
IGHJ2T5 152 direct
IGHT5 153 direct
IGHV15-8 154 direct
IGHV15-7 155 direct
IGHV9-6 156 opposite
IGHV1-5 157 opposite
IGHV4-4 158 opposite
IGHV7-3 159 opposite
IGHV1-2 160 opposite
IGHV4-1 161 direct
IGHD1 162 direct
IGHD2 163 direct
IGHD3 164 direct
IGHD4 165 direct
IGHD5 166 direct
IGHD6 167 direct
IGHD7 168 direct
IGHD8 169 direct
IGHD9 170 direct
IGHJ1 171 direct
IGHJ2 172 direct
IGHJ3 173 direct
IGHJ4 174 direct
IGHJ5 175 direct
IGHM 176 direct
IGHD 177 direct

Atlantic salmon (Salmo salar) IGH locus on chromosome 3 (locus B - Salsal ssa03)

IMGT gene name IMGT locus gene order IMGT gene orientation in locus Copy Number Variation (CNV)
IGHV2D-146 1 direct
IGHV4D-145 2 opposite
IGHV11D-144 3 opposite
IGHV16D-143 4 opposite
IGHV11D-142 5 direct
IGHV4D-141 6 direct
IGHV11D-140 7 direct
IGHV1D-139 8 direct
IGHV8D-138 9 direct
IGHV6D-137 10 direct
IGHV1D-136 11 direct
IGHV4D-135 12 direct
IGHV1D-134 13 direct
IGHV4D-133 14 direct
IGHV1D-132 15 direct
IGHV5D-131 16 direct
IGHJ1T1D 17 direct
IGHT1D 18 direct
IGHV16D-130 19 direct
IGHV2D-129 20 direct
IGHV1D-128 21 direct
IGHV16D-127 22 direct
IGHV15D-126 23 direct
IGHV16D-125 24 direct
IGHV10D-124 25 direct
IGHV8D-123 26 direct
IGHV13D-122 27 direct
IGHV1D-121 28 direct
IGHV10D-120 29 direct
IGHV6D-119 30 direct
IGHV6D-118 31 direct
IGHV6D-117 32 direct
IGHV16D-116 33 direct
IGHV11D-115 34 direct
IGHV1D-114 35 direct
IGHV6D-113 36 direct
IGHV10D-112 37 direct
IGHV8D-110 38 direct
IGHV6D-109 39 direct
IGHV1D-108 40 direct
IGHV6D-107 41 direct
IGHV1D-106-1 42 direct
IGHV4D-106 43 direct
IGHV3D-105-1 44 direct
IGHV9D-105 45 direct
IGHV9D-104 46 direct
IGHV9D-103 47 direct
IGHV14D-102 48 direct
IGHV1D-101 49 direct
IGHV4D-100 50 direct
IGHV11D-98 51 direct
IGHV1D-97 52 direct
IGHV8D-96 53 direct
IGHV6D-95 54 direct
IGHV4D-94 55 direct
IGHV1D-93 56 direct
IGHV4D-92 57 direct
IGHV1D-91 58 direct
IGHV5D-90 59 direct
IGHD1T2D 60 direct
IGHD2T2D 61 direct
IGHJ1T2D 62 direct
IGHJ2T2D 63 direct
IGHT2D 64 direct
IGHV16D-89 65 direct
IGHV2D-88 66 direct
IGHV1D-87 67 direct
IGHV16D-86 68 direct
IGHV15D-85 69 direct
IGHV10D-84 70 direct
IGHV8D-83 71 direct
IGHV13D-82 72 direct
IGHV1D-81 73 direct
IGHV10D-80 74 direct
IGHV6D-79 75 direct
IGHV6D-78 76 direct
IGHV6D-77 77 direct
IGHV16D-76 78 direct
IGHV11D-75 79 direct
IGHV1D-74 80 direct
IGHV6D-73 81 direct
IGHV10D-72 82 direct
IGHV8D-71 83 direct
IGHV6D-70 84 direct
IGHV1D-69 85 direct
IGHV6D-68 86 direct
IGHV1D-67 87 direct
IGHV4D-66 88 direct
IGHV16D-65 89 direct
IGHV16D-64 90 direct
IGHV2D-63 91 direct
IGHV1D-62 92 direct
IGHV16D-61 93 direct
IGHV15D-60 94 direct
IGHV16D-59 95 direct
IGHV10D-58 96 direct
IGHV1D-57 97 direct
IGHV10D-56 98 direct
IGHV1D-55 99 direct
IGHV3D-54 100 direct
IGHV9D-53 101 direct
IGHV9D-52 102 direct
IGHV4D-51 103 direct
IGHV1D-50-1 104 direct
IGHV12D-50 105 opposite
IGHV1D-49-1 106 opposite
IGHV1D-49 107 opposite
IGHV8D-48 108 direct
IGHV3D-47 109 direct
IGHV9D-46 110 direct
IGHV9D-45 111 direct
IGHV1D-44-3 112 direct
IGHV9D-44-2 113 direct
IGHV4D-44-1 114 direct
IGHV5D-44 115 opposite
IGHV4D-43 116 direct
IGHV16D-42 117 direct
IGHV6D-41 118 direct
IGHV2D-40 119 direct
IGHV2D-39 120 direct
IGHV15D-38 121 direct
IGHV10D-36 122 direct
IGHV1D-34 123 direct
IGHV4D-33 124 direct
IGHV1D-32 125 direct
IGHV5D-31 126 direct
IGHV2D-30 127 direct
IGHV8D-28 128 direct
IGHV6D-27 129 direct
IGHV6D-26 130 direct
IGHV1D-25 131 direct
IGHV6D-24 132 direct
IGHT3D 133 direct
IGHV4D-23-1 134 direct
IGHD3T3D 135 direct
IGHD2T3D 136 direct
IGHD1T3D 137 direct
IGHV16D-23 138 direct
IGHV15D-22 139 direct
IGHV6D-21 140 direct
IGHV6D-20 141 direct
IGHV6D-19 142 direct
IGHV6D-18 143 direct
IGHV6D-17 144 direct
IGHV6D-16 145 direct
IGHV7D-15 146 direct
IGHV1D-14 147 direct
IGHV16D-13 148 opposite
IGHV2D-12 149 direct
IGHV6D-11 150 direct
IGHV3D-9 151 opposite
IGHV4D-8-1 152 opposite
IGHV7D-8 153 opposite
IGHV1D-7-2 154 opposite
IGHV4D-7-1 155 opposite
IGHV3D-7 156 opposite
IGHV12D-6 157 opposite
IGHV1D-5 158 opposite
IGHV1D-4 159 opposite
IGHV1D-3 160 direct
IGHV6D-2 161 direct
IGHV4D-1 162 direct
IGHD1D 163 direct
IGHD2D 164 direct
IGHD3D 165 direct
IGHD4D 166 direct
IGHD5D 167 direct
IGHD6D 168 direct
IGHJ1D 169 direct
IGHJ2D 170 direct
IGHJ3D 171 direct
IGHJ4D 172 direct
IGHJ5D 173 direct
IGHMD 174 direct
IGHDD 175 direct
Created:
15/01/2019
Last updated:
22/09/2023
Authors:
Saida Hadi-Saljoqi