IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers				Strain	Clone names	Accession numbers	Positions in the sequence
TRBV1	TRBV1S1	TRBV1S1*01	(F)		+	+				B1		U60425	[1]		#c
TRBV1	TRBV1S2	TRBV1S2*01	(F)		+	+				B21		U60426	[1]		#c
TRBV2	TRBV2	TRBV2*01	(F)		+	+				B11		U60427	[1]		#c
TRBV3	TRBV3	TRBV3*01	(F)		+	+				B3N		U60432	[1]		#c				B3	U60433	[1]	(1)	#c
TRBV4	TRBV4	TRBV4*01	(F)		+	+				B12		U60428	[1]		#c				B24	U60429	[1]	(2)	#c
TRBV5	TRBV5	TRBV5*01	(F)		+	+				B18		U60424	[1]		#c
TRBV6	TRBV6	TRBV6*01	(F)		+	+				B6		U60434	[1]	(3)	#c
TRBV7	TRBV7	TRBV7*01	(F)		+	+				B26-ST63		U60430	[1]		#c
TRBV8	TRBV8S1	TRBV8S1*01	(F)		+	+				B8		U60435	[1]		#c
TRBV8	TRBV8S2	TRBV8S2*01	(F)		+	+				B20		U60436	[1]		#c
TRBV9	TRBV9	TRBV9*01	(F)		+	+				B27-KQ15		U60431	[1]	(4)	#c
TRBV10	TRBV10	TRBV10*01	(F)		+	+				TCLG2ED		U75994	[1]		#c

#c: rearranged cDNA.

IMGT notes:

(1) Partial V-REGION: AA 1 to 75 are missing (no FR1-IMGT, no CDR1-IMGT, no FR2-IMGT, no CDR2-IMGT and partial FR3-IMGT).
(2) Partial V-REGION: AA 1 to 85 are missing (no FR1-IMGT, no CDR1-IMGT, no FR2-IMGT, no CDR2-IMGT and partial FR3-IMGT).
(3) Partial V-REGION: AA 1 to 8 are missing (partial FR1-IMGT).
(4) Partial V-REGION: AA 1 to 9 are missing (partial FR1-IMGT).

IMGT references:

[1] Chretien I. et al., Eur. J. Immunol., 27, 763-771 (1997). PMID:9079820

See also (IMGT Scientific chart):

Created:: 26/02/2003
Last updated:: 22/09/2023
Authors:: Delphine Guiraudou

IMGT Repertoire (IG and TR)

Gene table: African clawed frog (Xenopus laevis) TRBV