IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

Ma's night monkey (Aotus nancymaae) TRAJ gene names are according to the human TRAJ gene names (Germline gene table: Human TRAJ).

IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain			Clone names	Accession numbers	Positions in the sequence
	TRAJ2	TRAJ2*01	(F)		+	+						AF027554	[1]	#c
	TRAJ5	TRAJ5*01	(F)		+	+						AF027559	[1]	#c
	TRAJ9	TRAJ9*01	(F)		+	+						AF027547	[1]	#c
	TRAJ15	TRAJ15*01	(F)		+	+						AF027567	[1]	#c				AF027566	[1]	#c
																		AF027553	[1]	#c
																		AF027557	[1]	#c
		TRAJ15*02	(F)		+	+						AF027545	[1]	#c				AF027544	[1]	#c
	TRAJ22	TRAJ22*01	(F)		+	+						AF027561	[1]	#c
	TRAJ23	TRAJ23*01	(F)		+	+						AF027548	[1]	#c				AF027543	[1]	#c
	TRAJ27	TRAJ27*01	(F)		+	+						AF027552	[1]	#c
	TRAJ28	TRAJ28*01	(F)		+	+						AF027564	[1]	#c
	TRAJ30	TRAJ30*01	(F)		+	+						AF027549	[1]	#c
	TRAJ32	TRAJ32*01	(F)		+	+						AF027542	[1]	#c
	TRAJ34	TRAJ34*01	(F)		+	+						AF027569	[1]	#c
	TRAJ37	TRAJ37*01	(F)		+	+						AF027551	[1]	#c				AF027555	[1]	#c
	TRAJ37	TRAJ37*01	(F)		+	+						AF027551	[1]	#c				AF027563	[1]	#c
	TRAJ40	TRAJ40*01	(F)		+	+						AF027541	[1]	#c				AF027550	[1]	#c
	TRAJ42	TRAJ42*01	(F)		+	+						AF027558	[1]	#c
	TRAJ45	TRAJ45*01	(F)		+	+						AF027556	[1]	#c				AF027562	[1]	#c
	TRAJ52	TRAJ52*01	(F)		+	+						AF027565	[1]	#c
	TRAJ52	TRAJ52*02	(F)		+	+						AF027568	[1]	#c
	TRAJ56	TRAJ56*01	(F)		+	+						AF027560	[1]	#c

#c: rearranged cDNA.

IMGT references:

[1] Favre N. et al., Immunogenetics, 48, 253-259 (1998). PMID:9716644

See also (IMGT Scientific chart):

Created:: 04/06/2003
Last updated:: 22/09/2023
Authors:: Géraldine Folch

IMGT Repertoire (IG and TR)

Gene table: Ma's night monkey (Aotus nancymaae) TRAJ