IMGT Repertoire (IG and TR)

Gene table: Ma's night monkey (Aotus nancymaae) TRAV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Ma's night monkey (Aotus nancymaae) TRAV subgroup names are according to the human TRAV subgroup names (Germline gene table: Human TRAV).

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
TRAV5 TRAV5 TRAV5*01 (F) + + AF027543 [1] #c AF027542 [1] (1) #c
AF027544 [1] #c
AF027545 [1] #c
AF027553 [1] #c
AF027563 [1] #c
AF027564 [1] #c
AF027566 [1] #c
TRAV5*02 (F) + + AF027547 [1] #c AF027551 [1] #c
AF027552 [1] #c
TRAV5*03 (F) + + AF027549 [1] #c
TRAV5*04 (F) + + AF027554 [1] #c
TRAV9 TRAV9S1 TRAV9S1*01 (F) + + AF027557 [1] #c
TRAV12 TRAV12S1 TRAV12S1*01 (F) + + AF027561 [1] #c
TRAV12S2 TRAV12S2*01 (F) + + AF027546 [1] #c AF027559 [1] #c
TRAV12S2*02 (F) + + AF027562 [1] #c
TRAV13 TRAV13S1 TRAV13S1*01 (F) + + AF027560 [1] #c AF027567 [1] #c
TRAV13S1*02 (F) + + AF027548 [1] #c
TRAV13S1*03 (F) + + AF027565 [1] #c
TRAV13S1*04 (F) + + AF027569 [1] #c
TRAV17 TRAV17 TRAV17*01 (F) + + AF027556 [1] #c AF027568 [1] #c
TRAV19 TRAV19 TRAV19*01 (F) + + AF027550 [1] #c
TRAV21 TRAV21 TRAV21*01 (F) + + AF027541 [1] #c AF027555 [1] #c
TRAV29 TRAV29 TRAV29*01 (F) + + AF027558 [1] #c

#c: rearranged cDNA.

IMGT notes:
  1. (1) Pseudogene because FR1-IMGT and CDR1-IMGT are duplicated, truncated FR2-IMGT.
IMGT references:
  1. [1] Favre N. et al., Immunogenetics, 48, 253-259 (1998). PMID:9716644
Last updated:
Géraldine Folch