IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

The designation of the Arctic char (Salvelinus alpinus) IGHV subgroups is according to that of the Rainbow trout (Oncorhynchus mykiss) IGHV subgroups [2].
Representatives of the IGHV7, IGHV9, and IGHV10 subgroups have not yet been found in the Arctic char.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers				Strain	Clone names	Accession numbers	Positions in the sequence
IGHV1	IGHV1S1	IGHV1S1*01	(F)		+	+				cACVH4		AJ000361	[1]		#c
IGHV1	IGHV1S2	IGHV1S2*01	(F)		+	+				cACVH9		AJ000367	[1]		#c
IGHV2	IGHV2S1	IGHV2S1*01	(F)		+	+				cACVH3		AJ000360	[1]		#c
IGHV2	IGHV2S2	IGHV2S2*01	(F)		+	+				cACVH27		AJ000363	[1]		#c
IGHV3	IGHV3S1	IGHV3S1*01	(F)		+	+				cACVH124		AJ000366	[1]	(1)	#c
IGHV4	IGHV4S1	IGHV4S1*01	(F)		+	+				cACVH8		AJ000368	[1]		#c
IGHV5	IGHV5S1	IGHV5S1*01	(F)		+	+				cACVH1		AJ000359	[1]		#c
	IGHV5S2	IGHV5S2*01	(F)		+	+				cACVH2		AJ000358	[1]		#c
	IGHV5S3	IGHV5S3*01	(F)		+	+				cACVH31		AJ000364	[1]		#c
IGHV6	IGHV6S1	IGHV6S1*01	(F)		+	+				cACVH6		AJ000369	[1]		#c
IGHV6	IGHV6S2	IGHV6S2*01	(F)		+	+				cACVH10		AJ000370	[1]		#c
IGHV8	IGHV8S1	IGHV8S1*01	(F)		+	+				cACVH5		AJ000362	[1]		#c
IGHV11	IGHV11S1	IGHV11S1*01	(F)		+	+				cACVH130		AJ000365	[1]		#c

IMGT notes:

(1) V-REGION is partial: AA 1 is missing (partial FR1-IMGT).

IMGT references:

[1] Andersson E. and Matsunaga T., Immunogenetics, 47, 272-277 (1998). PMID:9435346
[2] Roman T. et al., Immunogenetics, 43, 325-326 (1996). PMID:9110939

See also (IMGT Scientific chart):

Created:: 29/06/1998
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table: Arctic char (Salvelinus alpinus) IGHV