IMGT Repertoire (IG and TR)

Gene table - Cassette gene content: Atlantic salmon (Salmo salar) IGI

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• Gene table: Atlantic salmon (Salmo salar) IGIV
• Gene table: Atlantic salmon (Salmo salar) IGIJ
• Gene table: Atlantic salmon (Salmo salar) IGIC

• Fct: FUNCTIONALITY
  • F: Functional
  • P: Pseudogene
  • ORF: Open Reading Frame
• R: Rearranged
• T: Transcribed
• Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

• IMGT gene name to get the corresponding IMGT/GENE-DB entry,
• IMGT allele name to see the corresponding Alignments of alleles,
• accession number to get the corresponding IMGT/LIGM-DB entry.

cDNAs have been included in this table as they are informative for the gene content of the corresponding genomic cassettes.

Created:

04/06/2003

Last updated:

22/09/2023

Authors:

Nathalie Bosc

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