Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of bornean orangutan (Pongo pygmaeus) IGHD IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation		Chromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)		Secondary
accession
numbers		IsolateClone namesAccession
numbers		Positions
in the sequence
(D-GENE-UNIT)
or D-REGION (*)
IGHDIGHD1-1 IGHD1-1*01 F AG05252 IMGT000144 [1] MAP 1345010-1345082
IGHDIGHD1-6 IGHD1-6*01 ORF (1) AG05252 IMGT000144 [1] MAP 1353116-1353188
IGHDIGHD1-12 IGHD1-12*01 F AG05252 IMGT000144 [1] MAP 1362564-1362636
IGHDIGHD1-18 IGHD1-18*01 F AG05252 IMGT000144 [1] MAP 1371943-1372015
IGHDIGHD1-24 IGHD1-24*01 F AG05252 IMGT000144 [1] MAP 1381349-1381421
IGHDIGHD1-30 IGHD1-30*01 ORF (2) AG05252 IMGT000144 [1] MAP 1391281-1391356
IGHDIGHD2-7 IGHD2-7*01 F AG05252 IMGT000144 [1] MAP 1355782-1355868
IGHDIGHD2-13 IGHD2-13*01 F AG05252 IMGT000144 [1] MAP 1365219-1365305
IGHDIGHD2-19 IGHD2-19*01 F AG05252 IMGT000144 [1] MAP 1374585-1374671
IGHDIGHD2-25 IGHD2-25*01 F AG05252 IMGT000144 [1] MAP 1384001-1384087
IGHDIGHD3-2 IGHD3-2*01 F AG05252 IMGT000144 [1] MAP 1349216-1349302
IGHDIGHD3-8 IGHD3-8*01 F AG05252 IMGT000144 [1] MAP 1358073-1358159
IGHDIGHD3-14 IGHD3-14*01 F AG05252 IMGT000144 [1] MAP 1367811-1367897
IGHDIGHD3-20 IGHD3-20*01 F AG05252 IMGT000144 [1] MAP 1376863-1376952
IGHDIGHD3-26 IGHD3-26*01 F AG05252 IMGT000144 [1] MAP 1386277-1386369
IGHDIGHD4-3 IGHD4-3*01 ORF (3) AG05252 IMGT000144 [1] MAP 1350115-1350186
IGHDIGHD4-9 IGHD4-9*01 ORF (4) AG05252 IMGT000144 [1] MAP 1359223-1359294
IGHDIGHD4-15 IGHD4-15*01 F AG05252 IMGT000144 [1] MAP 1368963-1369037
IGHDIGHD4-21 IGHD4-21*01 F AG05252 IMGT000144 [1] MAP 1378007-1378078
IGHDIGHD4-27 IGHD4-27*01 ORF (5) AG05252 IMGT000144 [1] MAP 1387436-1387510
IGHDIGHD5-4 IGHD5-4*01 F AG05252 IMGT000144 [1] MAP 1351073-1351151
IGHDIGHD5-10 IGHD5-10*01 F AG05252 IMGT000144 [1] MAP 1360185-1360260
IGHDIGHD5-16 IGHD5-16*01 ORF (6) AG05252 IMGT000144 [1] MAP 1369921-1369996
IGHDIGHD5-22 IGHD5-22*01 ORF (7) AG05252 IMGT000144 [1] MAP 1378969-1379047
IGHDIGHD5-28 IGHD5-28*01 ORF (8) AG05252 IMGT000144 [1] MAP 1388401-1388476
IGHDIGHD6-5 IGHD6-5*01 ORF (9) AG05252 IMGT000144 [1] MAP 1352943-1353019
IGHDIGHD6-11 IGHD6-11*01 F AG05252 IMGT000144 [1] MAP 1362062-1362135
IGHDIGHD6-17 IGHD6-17*01 F AG05252 IMGT000144 [1] MAP 1371432-1371511
IGHDIGHD6-23 IGHD6-23*01 F AG05252 IMGT000144 [1] MAP 1380838-1380914
IGHDIGHD6-29 IGHD6-29*01 F AG05252 IMGT000144 [1] MAP 1390776-1390849
IGHDIGHD7-31 IGHD7-31*01 F AG05252 IMGT000144 [1] MAP 1413109-1413175
IMGT notes: ↑
  1. noncanonical 5'D-NONAMER:ggataccaa instead of ggattctgt
  2. noncanonical 5'D-HEPTAMER:catggtg instead of cactgtg
  3. noncanonical 3'D-NONAMER:gaaaaactg instead of tccaaaact
  4. noncanonical 5'D-HEPTAMER:tgctgtg instead of cactgtg
  5. noncanonical 5'D-HEPTAMER:tactgtt instead of cactgtg
  6. noncanonical 5'D-HEPTAMER:ggccgtg instead of cactgtg
  7. noncanonical 3'D-NONAMER:gcggcaacc instead of tccaaaact
  8. noncanonical 5'D-HEPTAMER:ggccatg instead of cactgtg
  9. noncanonical 3'D-NONAMER:caccccaca instead of tccaaaact
IMGT references: ↑
  1. Koren,S. et al., Complete, haplotype-resolved assemblies of non-human primate chromosomes X and Y, Unpublished.