Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of bornean orangutan (Pongo pygmaeus) IGHV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation		Chromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		IsolateClone namesAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGHV1IGHV1-4 IGHV1-4*01 F AG05252 IMGT000144 [1] MAP 1265031-1265506
IGHV1IGHV1-6 IGHV1-6*01 F AG05252 IMGT000144 [1] MAP 1247125-1247601
IGHV1IGHV1-26 IGHV1-26*01 P (1) AG05252 IMGT000144 [1] MAP 1090823->1090951 *
IGHV1IGHV1-33 IGHV1-33*01 P (2) AG05252 IMGT000144 [1] MAP 1041103-1041574
IGHV1IGHV1-38 IGHV1-38*01 P (3) AG05252 IMGT000144 [1] MAP 1009230-1009706
IGHV1IGHV1-39 IGHV1-39*01 P (4) AG05252 IMGT000144 [1] MAP 1000825-1001314
IGHV1IGHV1-44 IGHV1-44*01 ORF (5) AG05252 IMGT000144 [1] MAP 966046-966522
IGHV1IGHV1-47 IGHV1-47*01 P (6) AG05252 IMGT000144 [1] MAP 947524-947816 *
IGHV1IGHV1-50 IGHV1-50*01 P (7) AG05252 IMGT000144 [1] MAP 925782-926256
IGHV1IGHV1-54 IGHV1-54*01 F AG05252 IMGT000144 [1] MAP 906805-907281
IGHV1IGHV1-68 IGHV1-68*01 P (8) AG05252 IMGT000144 [1] MAP 810805-811281
IGHV1IGHV1-79 IGHV1-79*01 P (9) AG05252 IMGT000144 [1] MAP 718991-719465
IGHV1IGHV1-80 IGHV1-80*01 ORF (10) AG05252 IMGT000144 [1] MAP 714870-715346
IGHV1IGHV1-98 IGHV1-98*01 ORF (11) AG05252 IMGT000144 [1] MAP 588723-589199
IGHV1IGHV1-103 IGHV1-103*01 F AG05252 IMGT000144 [1] MAP 564557-565033
IGHV1IGHV1-103-5 IGHV1-103-5*01 P (12) AG05252 IMGT000144 [1] MAP 539900-540376
IGHV1IGHV1-108 IGHV1-108*01 P (13) AG05252 IMGT000144 [1] MAP 466689-467163
IGHV1IGHV1-115-12 IGHV1-115-12*01 P (14) AG05252 IMGT000144 [1] MAP 346704-347183
IGHV1IGHV1-115-17 IGHV1-115-17*01 P (15) AG05252 IMGT000144 [1] MAP 323435-323914
IGHV1IGHV1-116 IGHV1-116*01 F AG05252 IMGT000144 [1] MAP 310954-311431
IGHV1IGHV1-119 IGHV1-119*01 F AG05252 IMGT000144 [1] MAP 274658-275135
IGHV1IGHV1-126 IGHV1-126*01 P (16) AG05252 IMGT000144 [1] MAP 200586-201037
IGHV2IGHV2-8 IGHV2-8*01 F AG05252 IMGT000144 [1] MAP 1223492-1223974
IGHV2IGHV2-48 IGHV2-48*01 F AG05252 IMGT000144 [1] MAP 938560-939042
IGHV2IGHV2-117 IGHV2-117*01 ORF (17) AG05252 IMGT000144 [1] MAP 301891-302373
IGHV2IGHV2-120 IGHV2-120*01 F AG05252 IMGT000144 [1] MAP 265615-266097
IGHV2IGHV2-132 IGHV2-132*01 F AG05252 IMGT000144 [1] MAP 116369-116851
IGHV3IGHV3-11 IGHV3-11*01 P (18) AG05252 IMGT000144 [1] MAP 1205719-1206210
IGHV3IGHV3-12 IGHV3-12*01 P (19) AG05252 IMGT000144 [1] MAP 1199131-1199624
IGHV3IGHV3-13 IGHV3-13*01 F AG05252 IMGT000144 [1] MAP 1182332-1182828
IGHV3IGHV3-15 IGHV3-15*01 P (20) AG05252 IMGT000144 [1] MAP 1173589-1174075
IGHV3IGHV3-16 IGHV3-16*01 F AG05252 IMGT000144 [1] MAP 1168326-1168816
IGHV3IGHV3-21 IGHV3-21*01 P (21) AG05252 IMGT000144 [1] MAP 1139718-1140212
IGHV3IGHV3-22 IGHV3-22*01 F AG05252 IMGT000144 [1] MAP 1125568-1126062
IGHV3IGHV3-23 IGHV3-23*01 P (22) AG05252 IMGT000144 [1] MAP 1108943-1109442
IGHV3IGHV3-25 IGHV3-25*01 F AG05252 IMGT000144 [1] MAP 1100734-1101228
IGHV3IGHV3-27 IGHV3-27*01 F AG05252 IMGT000144 [1] MAP 1071490-1071974
IGHV3IGHV3-31 IGHV3-31*01 P (23) AG05252 IMGT000144 [1] MAP 1057816-1058307
IGHV3IGHV3-34 IGHV3-34*01 F AG05252 IMGT000144 [1] MAP 1030160-1030660
IGHV3IGHV3-36 IGHV3-36*01 ORF (24) AG05252 IMGT000144 [1] MAP 1018462-1018953
IGHV3IGHV3-40 IGHV3-40*01 F AG05252 IMGT000144 [1] MAP 985045-985545
IGHV3IGHV3-43 IGHV3-43*01 F AG05252 IMGT000144 [1] MAP 973950-974447
IGHV3IGHV3-45 IGHV3-45*01 P (25) AG05252 IMGT000144 [1] MAP 953564-954058
IGHV3IGHV3-49 IGHV3-49*01 P (26) AG05252 IMGT000144 [1] MAP 930435-930906
IGHV3IGHV3-57 IGHV3-57*01 P (27) AG05252 IMGT000144 [1] MAP 886660-887156
IGHV3IGHV3-58 IGHV3-58*01 F AG05252 IMGT000144 [1] MAP 882948-883441
IGHV3IGHV3-60 IGHV3-60*01 P (25) AG05252 IMGT000144 [1] MAP 872098-872585
IGHV3IGHV3-63 IGHV3-63*01 F AG05252 IMGT000144 [1] MAP 849800-850294
IGHV3IGHV3-64 IGHV3-64*01 P (28) AG05252 IMGT000144 [1] MAP 846508->846810 *
IGHV3IGHV3-65 IGHV3-65*01 P (28) AG05252 IMGT000144 [1] MAP 842598->842901 *
IGHV3IGHV3-66 IGHV3-66*01 ORF (29) AG05252 IMGT000144 [1] MAP 828474-828965
IGHV3IGHV3-72 IGHV3-72*01 F AG05252 IMGT000144 [1] MAP 782545-783037
IGHV3IGHV3-73 IGHV3-73*01 P (30) AG05252 IMGT000144 [1] MAP 762537-763015
IGHV3IGHV3-74 IGHV3-74*01 F AG05252 IMGT000144 [1] MAP 755618-756114
IGHV3IGHV3-82 IGHV3-82*01 F AG05252 IMGT000144 [1] MAP 707290-707780
IGHV3IGHV3-84 IGHV3-84*01 F AG05252 IMGT000144 [1] MAP 680440-680934
IGHV3IGHV3-85 IGHV3-85*01 F AG05252 IMGT000144 [1] MAP 661242-661742
IGHV3IGHV3-87 IGHV3-87*01 P (31) AG05252 IMGT000144 [1] MAP 652102-652597
IGHV3IGHV3-91 IGHV3-91*01 P (32) AG05252 IMGT000144 [1] MAP 630852-631341
IGHV3IGHV3-92 IGHV3-92*01 P (33) AG05252 IMGT000144 [1] MAP 622423-622914
IGHV3IGHV3-94 IGHV3-94*01 P (34) AG05252 IMGT000144 [1] MAP 612722-613209
IGHV3IGHV3-100 IGHV3-100*01 P (35) AG05252 IMGT000144 [1] MAP 581025-581514
IGHV3IGHV3-102 IGHV3-102*01 P (36) AG05252 IMGT000144 [1] MAP 568148-568441 *
IGHV3IGHV3-103-2 IGHV3-103-2*01 P (3) AG05252 IMGT000144 [1] MAP 556581-557071
IGHV3IGHV3-103-4 IGHV3-103-4*01 P (36) AG05252 IMGT000144 [1] MAP 543489-543782 *
IGHV3IGHV3-105 IGHV3-105*01 P (37) AG05252 IMGT000144 [1] MAP 483601-484092
IGHV3IGHV3-110 IGHV3-110*01 P (38) AG05252 IMGT000144 [1] MAP 457887-458383
IGHV3IGHV3-112 IGHV3-112*01 P (39) AG05252 IMGT000144 [1] MAP 449739-450233
IGHV3IGHV3-113 IGHV3-113*01 F AG05252 IMGT000144 [1] MAP 444331-444818
IGHV3IGHV3-115 IGHV3-115*01 P (25) AG05252 IMGT000144 [1] MAP 433725-434217
IGHV3IGHV3-115-1 IGHV3-115-1*01 F AG05252 IMGT000144 [1] MAP 428256-428752
IGHV3IGHV3-115-4 IGHV3-115-4*01 P (40) AG05252 IMGT000144 [1] MAP 413350-413850
IGHV3IGHV3-115-6 IGHV3-115-6*01 P (41) AG05252 IMGT000144 [1] MAP 400944-401436
IGHV3IGHV3-115-8 IGHV3-115-8*01 F AG05252 IMGT000144 [1] MAP 374508-374999
IGHV3IGHV3-115-9 IGHV3-115-9*01 P (42) AG05252 IMGT000144 [1] MAP 366485-366978
IGHV3IGHV3-115-11 IGHV3-115-11*01 F AG05252 IMGT000144 [1] MAP 352439-352931
IGHV3IGHV3-118 IGHV3-118*01 F AG05252 IMGT000144 [1] MAP 297291-297785
IGHV3IGHV3-121 IGHV3-121*01 P (43) AG05252 IMGT000144 [1] MAP 261007-261504
IGHV3IGHV3-122 IGHV3-122*01 F AG05252 IMGT000144 [1] MAP 248417-248917
IGHV3IGHV3-123 IGHV3-123*01 F AG05252 IMGT000144 [1] MAP 236570-237064
IGHV3IGHV3-124 IGHV3-124*01 F AG05252 IMGT000144 [1] MAP 214155-214655
IGHV3IGHV3-125 IGHV3-125*01 F AG05252 IMGT000144 [1] MAP 205298-205800
IGHV3IGHV3-127 IGHV3-127*01 F AG05252 IMGT000144 [1] MAP 187018-187510
IGHV3IGHV3-128 IGHV3-128*01 P (44) AG05252 IMGT000144 [1] MAP 181813-182313
IGHV3IGHV3-129 IGHV3-129*01 F AG05252 IMGT000144 [1] MAP 164110-164603
IGHV3IGHV3-131 IGHV3-131*01 F AG05252 IMGT000144 [1] MAP 145735-146228
IGHV3IGHV3-133 IGHV3-133*01 F AG05252 IMGT000144 [1] MAP 106028-106528
IGHV3IGHV3-134 IGHV3-134*01 F AG05252 IMGT000144 [1] MAP 93687-94187
IGHV3IGHV3-135 IGHV3-135*01 F AG05252 IMGT000144 [1] MAP 86019-86513
IGHV3IGHV3-137 IGHV3-137*01 P (45) AG05252 IMGT000144 [1] MAP 70872-71379
IGHV3IGHV3-138 IGHV3-138*01 P (46) AG05252 IMGT000144 [1] MAP 67018-67503
IGHV3IGHV3-142 IGHV3-142*01 P (47) AG05252 IMGT000144 [1] MAP 30194->30488 *
IGHV4IGHV4-7 IGHV4-7*01 F AG05252 IMGT000144 [1] MAP 1240234-1240707
IGHV4IGHV4-55 IGHV4-55*01 F AG05252 IMGT000144 [1] MAP 893599-894073
IGHV4IGHV4-61 IGHV4-61*01 F AG05252 IMGT000144 [1] MAP 867555-868026
IGHV4IGHV4-69 IGHV4-69*01 F AG05252 IMGT000144 [1] MAP 804236-804707
IGHV4IGHV4-95 IGHV4-95*01 F AG05252 IMGT000144 [1] MAP 608075-608545
IGHV4IGHV4-99 IGHV4-99*01 F AG05252 IMGT000144 [1] MAP 583924-584394
IGHV4IGHV4-101 IGHV4-101*01 F AG05252 IMGT000144 [1] MAP 576630-577096
IGHV4IGHV4-103-1 IGHV4-103-1*01 F AG05252 IMGT000144 [1] MAP 559478-559948
IGHV4IGHV4-103-3 IGHV4-103-3*01 F AG05252 IMGT000144 [1] MAP 552020-552486
IGHV4IGHV4-104 IGHV4-104*01 F AG05252 IMGT000144 [1] MAP 486498-486971
IGHV4IGHV4-106 IGHV4-106*01 F AG05252 IMGT000144 [1] MAP 479118-479581
IGHV4IGHV4-109 IGHV4-109*01 F AG05252 IMGT000144 [1] MAP 461866-462337
IGHV4IGHV4-115-3 IGHV4-115-3*01 P (48) AG05252 IMGT000144 [1] MAP 416707-416993 *
IGHV4IGHV4-143 IGHV4-143*01 P (49) AG05252 IMGT000144 [1] MAP 24893-25367
IGHV5IGHV5-18 IGHV5-18*01 F AG05252 IMGT000144 [1] MAP 1148255-1148726
IGHV5IGHV5-88 IGHV5-88*01 ORF (50) AG05252 IMGT000144 [1] MAP 638532-639006
IGHV5IGHV5-140 IGHV5-140*01 P (51) AG05252 IMGT000144 [1] MAP 44101->44394 *
IGHV7IGHV7-52 IGHV7-52*01 F AG05252 IMGT000144 [1] MAP 914779-915254
IGHV7IGHV7-62 IGHV7-62*01 P (25) AG05252 IMGT000144 [1] MAP 863915-864387
IGHV7IGHV7-70 IGHV7-70*01 P (52) AG05252 IMGT000144 [1] MAP <800831-801033 *
IGHV7IGHV7-96 IGHV7-96*01 P (18) AG05252 IMGT000144 [1] MAP 604442-604914
IGHV7IGHV7-144 IGHV7-144*01 ORF (53) AG05252 IMGT000144 [1] MAP 23066-23541
IGHV8IGHV8-19 IGHV8-19*01 P (54) AG05252 IMGT000144 [1] MAP 1142441-1143035
IGHV8IGHV8-89 IGHV8-89*01 P (37) AG05252 IMGT000144 [1] MAP 633586-634235
IMGT notes: ↑
  1. partial gene in 3', no V-RS
  2. STOP-CODON in L-PART1, frameshifts in V-REGION: deletion of 1 nt and deletion of 1 nt in FR1-IMGT
  3. frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  4. STOP-CODON in V-REGION: position 30
  5. noncanonical DONOR-SPLICE:ngc instead of ngt
  6. no INIT-CODON:Arg instead of Met, frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  7. STOP-CODON in V-REGION: position 43
  8. no INIT-CODON:Val instead of Met
  9. frameshift in V-REGION: deletion of 2 nt in FR2-IMGT
  10. no 2nd-CYS:Tyr instead of Cys
  11. no 1st-CYS:Phe instead of Cys, no 2nd-CYS:Ser instead of Cys, noncanonical V-NONAMER:tcagaaact instead of acacaaacc
  12. STOP-CODON in V-REGION: position 99
  13. STOP-CODON in V-REGION: position 43, frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  14. frameshift in V-REGION: insertion of 2 nt in FR3-IMGT
  15. no INIT-CODON:Thr instead of Met, frameshift in L-PART1, STOP-CODON in V-REGION: position 43
  16. frameshifts in V-REGION: deletion of 1 nt and deletion of 13 nt in FR1-IMGT
  17. noncanonical V-NONAMER:acaagaact instead of acacaaacc
  18. frameshifts in V-REGION: several insertions and deletions
  19. STOP-CODON in V-REGION: position 97
  20. STOP-CODON in L-PART1, several STOP-CODON in V-REGION
  21. STOP-CODON in V-REGION: position 75, frameshifts in V-REGION: several insertions and deletions
  22. no INIT-CODON:Thr instead of Met, no DONOR-SPLICE
  23. STOP-CODON in V-REGION: position 75
  24. noncanonical DONOR-SPLICE:nat instead of ngt, noncanonical V-HEPTAMER:tcctgtg instead of cacagtg
  25. several STOP-CODON in V-REGION
  26. frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  27. STOP-CODON in L-PART1, several STOP-CODON in V-REGION, no CONSERVED-TRP: STOP-CODON instead of Trp
  28. frameshifts in V-REGION: several insertions and deletions, no V-RS
  29. no 1st-CYS:Tyr instead of Cys
  30. STOP-CODON in L-PART1
  31. no INIT-CODON:Val instead of Met, STOP-CODON in L-PART2, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  32. STOP-CODON in V-REGION: position 9
  33. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  34. frameshift in V-REGION: insertion of 1 nt in FR1-IMGT
  35. frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  36. frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  37. no INIT-CODON:Ile instead of Met
  38. frameshift in V-REGION: insertion of 5 nt in FR1-IMGT
  39. STOP-CODON in L-PART1, several STOP-CODON in V-REGION, frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  40. no INIT-CODON:Thr instead of Met
  41. STOP-CODON in V-REGION: position 52, frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  42. STOP-CODON in V-REGION: position 44
  43. STOP-CODON in V-REGION: position 90
  44. STOP-CODON in V-REGION: position 37
  45. no DONOR-SPLICE, frameshift in V-REGION: insertion of 13 nt in FR1-IMGT
  46. several STOP-CODON in V-REGION, no CONSERVED-TRP: STOP-CODON instead of Trp, frameshift in V-REGION: deletion of 2 nt in FR2-IMGT
  47. frameshift in L-PART1, frameshifts in V-REGION: several insertions and deletions, no V-RS
  48. no L-PART1, STOP-CODON in V-REGION: position 39
  49. no INIT-CODON:Val instead of Met, no CONSERVED-TRP:STOP-CODON instead of Trp
  50. noncanonical V-NONAMER:ctaaaaccc instead of acacaaacc
  51. no V-RS
  52. no L-PART1, no L-PART2, STOP-CODON in V-REGION: position 43
  53. noncanonical V-HEPTAMER:caccatg instead of cacagtg
  54. no INIT-CODON:Ile instead of Met, frameshifts in V-REGION: deletion of 1 nt and deletion of 64 nt in FR2-IMGT
IMGT references: ↑
  1. Koren,S. et al., Complete, haplotype-resolved assemblies of non-human primate chromosomes X and Y, Unpublished.