IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Breed			Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	IGLJ1	IGLJ1*01	ORF	(1)		17				San Clemente	CM004578.1		IMGT000033	[1]	MAP	565301..565366
	IGLJ2	IGLJ2*01	F			17				San Clemente	CM004578.1		IMGT000033	[1]	MAP	570330..570395

MAP: Mapped reference sequences.

IMGT notes:

(1) noncanonical J-MOTIF: LGXG instead of FGXG.

IMGT references:

[1] Schwartz J.C. et al. Immunogenetics 2018 May;70(5):317-326. doi: 10.1007/s00251-017-1033-3. Epub 2017 Oct 23. Free PMC Article. PMID:29063126

More information:

See also (IMGT Scientific chart):

Created:: 25/06/2019
Last updated:: 22/09/2023
Authors:: Morgane Bertignac

IMGT Repertoire (IG and TR)

Gene table: goat (Capra hircus) IGLJ